Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3476 ATGTTTTCTTATATTGAAGGAGCTACGTTGTTGGACATCAAGAAATCATTTAGGGATGTGGATAATGTTCTATATGATTGGACAAGCTCACCTTCTTCAGACTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTCTCTCTCTTAATCTTTCGGGTCTCAATCTGGACGGGGAAATTTCTCCTTCGGTTGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGTAATAGGCTTTCTGGGCAAATTCCAGATGAGATTGGTGATTGCTCTTCGTTAATAAATTTGGATTTATCGTTTAATGAGATTTATGGAGACATACCGTTTTCCATTTCGAAGTTGAAGCAACTTGGAATGCTAGTTCTGAAAAATAATCGGCTTATTGGACCGATCCCGTCAACCTTATCCCAGGTTCCGAACTTGAAGGTCTTAGATCTGGCACAGAATAATCTCAGCGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTCTGCGCGGCAACAATTTGGTAGGCACACTCTCTCCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACTGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCGTTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGTTATCAGGTCCCATTCCACCAGTAATAGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGCTGCAACATGTTATCTGGTCCAATCCCCTCTATCTTGGGGAATCTGACTTACACTGAGAAACTGTACTTGCACAGTAACAAGCTCACTGGATCCATTCCGGCCGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGGAAACTCACGGATCTGTTTGATCTAAATGTTGCTAATAACAACCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCGCCGTCTTTCCAGAGGCTGGAGAGTATGACTTACTTGAATCTCTCCTCAAACGATCTACGAGGTCCGATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCGAATAACAAAATTAGTGGCACAATTTCCTCGTCCTTCGGCGATCTGGAACATCTTCTAAAGCTAAATTTAAGCAGGAACCATTTAATGGGAATTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGCTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGCTCTCCTTGAGACTCGAAAACAACAATTTATCTGGGGATGTGACGTCGCTGATTAACTGCTTAAGTCTTACTGAATTAAACGTATCTTATAACAGTCTAGCTGGTGACATTCCCACAAGCAACAACTTCTCTAGGTTTTCATCTGACAGTTTCCTTGGAAATGTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAAGTTCGTACGACAGAGCGAGTGACAATATCTAAAGCCGCTATCTTGGGAATTGCTCTTGGTGCTCTAGTTATTCTTCTAATGATTCTCCTAACGGTGTGCCGTCCAAACAACACAATACCTTTCCCAGATGGATCACTTGATAAACCAGTTACCTACTCAACTCCCAAGCTAGTGATCCTTCACATGAACATGGCACTTCACGTGTATGAGGATATTATGAGGATGACCGAAAATCTGAGCGAAAAGTACATAATCGGACATGGAGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAATTGCAAACCTGTGGCTATCAAAAAGCTTTACTCTCACCAGCCCCTAAGCATGAAGGCATTCGAGACCGAACTTGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTCAGCCTCCAAGGATACTCCTTGTCCCCCTCTGGAAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGACCATCTACATGGCTCTAGCTCTACCAAGAAGAAAAAACTTGACTGGGACACTCGGCTTAATATTGCACATGGAGCAGCTCAAGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGCATCGCCAAGAGTTTATGCACCTCGAAGACTTATACATCCACTTATATCATGGGAACCATTGGATACATCGATCCAGAGTATGCTCGAACTTCCCGACTTACTGAGAAGTCTGATGTTTACAGCTTTGGCATTGTGTTGCTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAACCTCCACCAATTGATCTTATCAAAGACAGCCAACAATGCTGTAATGGAGACAGCTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTTGCTCTCCTATGCACAAAGAGGCAGCCATCCGATCGACCAACAATGCACGAAGTAACGCGCGTCATCAGTAGTCTCCTTCCCTGTGCCACACCACTGAAGCCAACGCCAACCATAACATCCCTGCCTCCATCTGCAAAAGTCCCTTGCTACAAGGACGAGTATGCAAATCTAAAAACGCCACACGTGCTGAACTGCCCGTCCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAATTCGGAGAGGTTATATCACAAAACAGTGAGTAA 2895 43.63 MFSYIEGATLLDIKKSFRDVDNVLYDWTSSPSSDYCIWRGVTCDNATLNVLSLNLSGLNLDGEISPSVGNLKGLQTLDLRGNRLSGQIPDEIGDCSSLINLDLSFNEIYGDIPFSISKLKQLGMLVLKNNRLIGPIPSTLSQVPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLSGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLMGIIPAEFGNLRSVMEIDISHNQLSGLIPQELSQLQNLLSLRLENNNLSGDVTSLINCLSLTELNVSYNSLAGDIPTSNNFSRFSSDSFLGNVALCGYWNSNNYPCHEVRTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMKAFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETADPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVISSLLPCATPLKPTPTITSLPPSAKVPCYKDEYANLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100037468 100044689 + Tan0015849.2 Tan01g3476 740900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3476 964 Gene3D Ribonuclease Inhibitor 168 240 IPR032675 -
Tan01g3476 964 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 278 551 - -
Tan01g3476 964 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 601 705 - -
Tan01g3476 964 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 168 277 - -
Tan01g3476 964 ProSiteProfiles Leucine-rich repeat profile. 145 167 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 706 909 - -
Tan01g3476 964 SUPERFAMILY RNI-like 187 519 - -
Tan01g3476 964 SUPERFAMILY Protein kinase-like (PK-like) 608 896 IPR011009 -
Tan01g3476 964 Gene3D Ribonuclease Inhibitor 5 167 IPR032675 -
Tan01g3476 964 Gene3D Phosphorylase Kinase; domain 1 601 705 - -
Tan01g3476 964 Gene3D Ribonuclease Inhibitor 241 550 IPR032675 -
Tan01g3476 964 Pfam Protein kinase domain 633 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3476 964 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine rich repeat N-terminal domain 6 44 IPR013210 -
Tan01g3476 964 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 306 898 IPR051716 -
Tan01g3476 964 CDD STKc_IRAK 636 901 - -
Tan01g3476 964 SUPERFAMILY L domain-like 9 239 - -
Tan01g3476 964 ProSiteProfiles Protein kinase domain profile. 630 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3476 964 SMART LRR_typ_2 143 167 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 191 215 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 478 501 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 71 95 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 430 453 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 310 334 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 382 406 IPR003591 -
Tan01g3476 964 SMART LRR_typ_2 454 477 IPR003591 -
Tan01g3476 964 ProSitePatterns Protein kinases ATP-binding region signature. 636 659 IPR017441 GO:0005524(InterPro)
Tan01g3476 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 753 765 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3476 964 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 4 167 - -
Tan01g3476 964 Gene3D Transferase(Phosphotransferase) domain 1 706 905 - -
Tan01g3476 964 SMART serkin_6 630 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 290 310 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 74 95 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 145 164 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 265 286 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 360 382 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 219 238 IPR001611 GO:0005515(InterPro)
Tan01g3476 964 Pfam Leucine Rich Repeat 385 404 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3476 Tan-Chr1:100037468 Tan07g0303 Tan-Chr7:6312189 2.00E-18 dispersed
Tan01g3475 Tan-Chr1:100037468 Tan01g3476 Tan-Chr1:100037468 1.20E-302 tandem
Tan01g3476 Tan-Chr1:100037468 Tan01g3477 Tan-Chr1:100039036 6.60E-06 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67084 PF00069 Pkinase 5.20E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3476 K20718 - csv:101214398 1775.76