Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3494 ATGCAGGACATGCTTTGCAGTTTCTTCACTATGATTGGGGATCCGGCCACAGGATTTTACTGTTATGCTCAGGGCTATAGCACGCATTTCTTTTGTGTGGCATCATTCTTGTGGACCACAACAATTGCATTCACCCTTCACCGTACTGTTGTTAGACATAAAACTGACATTGAAGATTTTGAGGCTATGTTTCACTTGTATGTATGGGGAACATCGTTAGTGTTGACTGTTATACGTTCAATTGGTAATAAACATGGACATTTAGGTACCTGGTGTTGGGCACAGTCAGGACGTACAGGAAAGGCTGTTCACTTTATAACATTTTACATGCCTCTCTGGGGTGCAATTCTCTACAATGGCTTTACTTACCTTCAAGTGATACGCATGCTTAATAATGCTACCCGTATGGCAGTTGGCATCTCAGATAGGTCTTACCAGACAGATGCAAGAGCAGACATGAAGGCTTTAAACAGATGGGGATATTATCCACTCATCCTCATAGGCTCATGGGCTTTTGGTACAATCAACCGTATCCATGATTTTATTGAGCCAGGTCATAAAATCTTCTGGCTGTCAGTTCTTGATGTTGGGATGGGATCTCTAATGGGCTTGTTCAATTCCATAGCATATGGTCTGAATTCTTCAGTGCGGCGGGCAATTTATGAAAGACTAGACCTGTTTTGGCCTGAAAAACTTCGGAGATGGCTTCCAAGCAATTCAAGATTCCGAAACCAACAACAAGAAGGTGAACTGGTTTCCTTGAGAAGTCAAGATTTGCAGTAG 783 42.4 MQDMLCSFFTMIGDPATGFYCYAQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKTDIEDFEAMFHLYVWGTSLVLTVIRSIGNKHGHLGTWCWAQSGRTGKAVHFITFYMPLWGAILYNGFTYLQVIRMLNNATRMAVGISDRSYQTDARADMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLSVLDVGMGSLMGLFNSIAYGLNSSVRRAIYERLDLFWPEKLRRWLPSNSRFRNQQQEGELVSLRSQDLQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100122646 100126513 + Tan0007147.5 Tan01g3494 740918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3494 260 Gene3D - 1 239 - -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 156 177 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 100 112 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 23 36 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 186 203 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 38 56 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 61 76 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 113 136 IPR022340 -
Tan01g3494 260 PRINTS Putative plant GPCR, GCR1, signature 204 220 IPR022340 -
Tan01g3494 260 Pfam Slime mold cyclic AMP receptor 2 214 - -
Tan01g3494 260 SUPERFAMILY Family A G protein-coupled receptor-like 14 246 - -
Tan01g3494 260 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 1 214 IPR017981 GO:0004888(InterPro)|GO:0007166(InterPro)|GO:0016020(InterPro)
Tan01g3494 260 PANTHER G PROTEIN-COUPLED RECEPTOR 157-RELATED 3 248 - GO:0004930(PANTHER)|GO:0005886(PANTHER)|GO:0007189(PANTHER)
Tan01g3494 260 PRINTS GCR1-cAMP receptor family signature 194 213 IPR022343 -
Tan01g3494 260 PRINTS GCR1-cAMP receptor family signature 21 39 IPR022343 -
Tan01g3494 260 PRINTS GCR1-cAMP receptor family signature 162 180 IPR022343 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3494 K22987 - - csv:101216480 511.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3491 Tan-Chr1:100121863 Tan01g3494 Tan-Chr1:100122646 9.00E-154 dispersed
Tan01g3492 Tan-Chr1:100122646 Tan01g3494 Tan-Chr1:100122646 3.90E-155 dispersed
Tan01g3493 Tan-Chr1:100122646 Tan01g3494 Tan-Chr1:100122646 2.30E-147 tandem
Tan01g3494 Tan-Chr1:100122646 Tan01g3495 Tan-Chr1:100122646 3.00E-147 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004383 1 3 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 6 1 42