Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3503 ATGCCCCCCATCAGAACCGCTGCCGCCCACCGCCACCGCGACCAAACTTCTGCATCTCAAGAACCTCAATTCCACTCGCCGACCAATGCCGCCGATGACGACGACGATCTTCTTCCTTCCACCCAAACAGTCCTCTCCTCGCGATCTTCGACCTCGCAAAAACTCTTCGCGACCTCCGACTTATCGCTCCACATTCGCGCTCCCAAGAAGCCGAAGTGTTCTGCTCCGACGGCCACTGGTAAGGAAAACATTCCCTCTATAGCGCATTGCAATGTCGGATTTAAGCCAAATTTTGATAGACATAATGGCGCTCCTGATTTGGACGGTGGTGAAACATTCGGATCGTCGGAAATTGATTTAGGTTGCAGTTTGGATTTGATACAGCCGAGCATTGTCGGCTGTAGTTACGAAACTCATAATGCAAACTCGGGAGGGGAGATGTTTGACGGGGATGATGATTTTTCTGGTGCGACGGATGAATGTGAAGGGTCGAAGGTCAAGGGGGGCTACTTATGGAATTCGATTGAATCTAGGTTAATTAATTCCAGAGTAGATTGCGATGTCGGCGTCAGTGGCAGTGGAGTTGATAAGGCGAGCAGTGATGATTTTGAGTCGGATACAGAGCTAGACTTGTTGCTCAATCTGCATTCGCAACTGGATGAGGAAGACCGTATTGGTGGAGTGGGATTTGATACTAAGGAAACATATTTTCCAATGGATGAGGACCGTCTGATTCAATGTCCTCTATGTGGGGTTGATATTTCTGATCTTAGCGATGAGCAACGCCTTGTACACACCAATGATTGTATTGACAAAGATGACACGCAAGCTCAAAATGCTGCTCTCACACCTGATAGAAAGCAAACTTCAGGTCCTCAACAATCTGGTGATAATTCGAGATTTTCAACTGTTCTCAAATGGTTGCATGGTCTTGGTTTATCGAAATATGAAGACATTTTTGTTAGGGAGGAGATCGATTGGGACACATTACAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATTACTGCACTTGGGCCCCGAAGGAAGATCACACATGCTCTCTCCGAACTCAGAAAAGAATCTTCTGCGGTTGAAACTTGCACGAATTCACATGCTCCTTCCGGGATTGGGCAACAGAGTAACCATGGTTCAGATCGGCGGGAAGGATCAATCAATGGAACTAATAAAGCACCTGCGAACAAGTTGATCACTGATTATTTCCCAGGCTTTGCCATTAATAAGAAGAATACATGCAGCATCTCTAGTGGTCAGAAAGATGTGGGAAAAAAATTACCCGACTCTCTTCCTAAAGGTAAAACTGCGAAAAGAAATGTAAGAAATGCGAAGCCTAGGAATGTTCCTGTCTGGAGTTGTATACCAGGGACACCATTCAGAGTGGATGCTTTTCGACATCTTAGAGGAGATTGTTCTCATTGGTTTCTTTCTCACTTTCATATGGATCATTATCAAGGTCTGACAAAATCATTTTGTCATGGAATGATTTATTGTTCGCTTATAACAGCAAAGCTAGTGAACATGAAGATTGGAATTCCGTGGGAAAGGTTACAAGTTTTACCTCTCGACCAAAAAATTAACATTGCGGGAATAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAACGGTAAGGCTGTTCTTCATACAGGTGATTTCCGATTTTGTGAGCAAATGGGAAGGTTGTCGGTTTTTAAAACATGTCGTATCCATACTCTGATCCTTGATACCACTTATTGTGATCCACAGTATGATTTCCCGAAACAGGAGACCGTTATACAATTTGTAATTGATGCCATTCAGGCTGAAGCTTTCAACCCAAAAACTCTTTTCCTAATTGGATGTTACACCATCGTTATCCCTAACAGGAAAGGAACGGCTTTTTTTAGAGGTTGCCCGTGTTCTGCGCAAGAAGGTATATGTAACTGCAGCAAAGTTACGAATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGA 2049 43.97 MPPIRTAAAHRHRDQTSASQEPQFHSPTNAADDDDDLLPSTQTVLSSRSSTSQKLFATSDLSLHIRAPKKPKCSAPTATGKENIPSIAHCNVGFKPNFDRHNGAPDLDGGETFGSSEIDLGCSLDLIQPSIVGCSYETHNANSGGEMFDGDDDFSGATDECEGSKVKGGYLWNSIESRLINSRVDCDVGVSGSGVDKASSDDFESDTELDLLLNLHSQLDEEDRIGGVGFDTKETYFPMDEDRLIQCPLCGVDISDLSDEQRLVHTNDCIDKDDTQAQNAALTPDRKQTSGPQQSGDNSRFSTVLKWLHGLGLSKYEDIFVREEIDWDTLQWLTDEDLNNMGITALGPRRKITHALSELRKESSAVETCTNSHAPSGIGQQSNHGSDRREGSINGTNKAPANKLITDYFPGFAINKKNTCSISSGQKDVGKKLPDSLPKGKTAKRNVRNAKPRNVPVWSCIPGTPFRVDAFRHLRGDCSHWFLSHFHMDHYQGLTKSFCHGMIYCSLITAKLVNMKIGIPWERLQVLPLDQKINIAGIDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGRLSVFKTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIVIPNRKGTAFFRGCPCSAQEGICNCSKVTNFEMLGVLSGGHAVVYSE 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100168284 100180427 + Tan0016552.2 Tan01g3503 740927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3503 682 ProSiteProfiles SAM domain profile. 299 362 IPR001660 GO:0005515(InterPro)
Tan01g3503 682 SMART SAM_4 296 362 IPR001660 GO:0005515(InterPro)
Tan01g3503 682 MobiDBLite consensus disorder prediction 35 51 - -
Tan01g3503 682 MobiDBLite consensus disorder prediction 363 398 - -
Tan01g3503 682 CDD SNM1A-1C-like_MBL-fold 443 599 - -
Tan01g3503 682 Gene3D - 295 372 IPR013761 -
Tan01g3503 682 MobiDBLite consensus disorder prediction 424 445 - -
Tan01g3503 682 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 452 635 - GO:0003684(PANTHER)|GO:0006303(PANTHER)|GO:0035312(PANTHER)|GO:0036297(PANTHER)
Tan01g3503 682 SUPERFAMILY SAM/Pointed domain 297 361 IPR013761 -
Tan01g3503 682 Pfam SAM domain (Sterile alpha motif) 298 360 IPR001660 GO:0005515(InterPro)
Tan01g3503 682 MobiDBLite consensus disorder prediction 1 51 - -
Tan01g3503 682 CDD SAM_superfamily 304 358 - -
Tan01g3503 682 FunFam DNA ligase 6 461 620 - -
Tan01g3503 682 Gene3D - 461 601 IPR036866 -
Tan01g3503 682 Gene3D - 602 635 - -
Tan01g3503 682 SUPERFAMILY Metallo-hydrolase/oxidoreductase 467 634 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3503 K15340 - - csv:101218609 1006.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3503 Tan-Chr1:100168284 Tan04g1922 Tan-Chr4:65130903 6.90E-34 dispersed
Tan01g3502 Tan-Chr1:100168284 Tan01g3503 Tan-Chr1:100168284 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34