Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3515 ATGGAATCGGAGGATTCAGTGACATCAAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCTTTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTGCTGGTCTCAAGCTTTTTGAGTTTTCTTTGACTCTGCTCTCTGATCATTCTGAGAGACAACACGTACAGGCTTGCGTATCTCAGGCCAAGGAAATTCTGCACCAAATTGACAATCCATCTCCGCCTCCACAAAGTACTTCATCAAATGGAGGCTATCTCTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCCACGCTATTTAATGCTGAATCTTCTCAAGGTCCGGTTGAGAACAACAACACTTCTGAGAATACTGCTGATATTCTTCAAGCGCTTATTGAAAATCTAGAGAACGCTGTTGATGGGTTCATGGATTTGGAAACAGCTAGCGGACCACCAAAAGTCCCGCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGCGCCATTTGCAGGGAAAACTTAGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAGCACACATTCCACCCACCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCTTGTCCGATCTGTCGACATGAATTGCCCACCGATGACCATGCTTATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCCGAAGAAGAGAGAAAAGGAGCTGCAAATGCTGTTCGTGGGGGTGAATATATGTACATTTGA 945 46.46 MESEDSVTSRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLAGLKLFEFSLTLLSDHSERQHVQACVSQAKEILHQIDNPSPPPQSTSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAATLFNAESSQGPVENNNTSENTADILQALIENLENAVDGFMDLETASGPPKVPPASKEVVAKLPVITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100246190 100248878 - Tan0021346.1 Tan01g3515 740939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3515 314 Coils Coil 285 305 - -
Tan01g3515 314 Pfam Ring finger domain 233 275 IPR001841 -
Tan01g3515 314 SUPERFAMILY RING/U-box 228 281 - -
Tan01g3515 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Tan01g3515 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan01g3515 314 Coils Coil 168 188 - -
Tan01g3515 314 CDD RING-H2_RNF126-like 233 275 - -
Tan01g3515 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Tan01g3515 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 281 IPR013083 -
Tan01g3515 314 SMART ring_2 234 274 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3515 Tan-Chr1:100246190 Tan05g2146 Tan-Chr5:72215411 1.50E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3515 K16274 - csv:101218065 432.95