Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3520 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGCTCTTCCTTCCATGTGGCCTGAGGATGTTGGACCAGATGTCAGAAAACAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATTGTTGATTTCAAGAGACTAATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCGATTTCCATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTTATTGTTCAAAATAAGAGAGTTGAAATTGATGCAGAGTATGACACAGTGACATACTGGAAGCAGCGAACCATGGATCTGGAAAAATTACTGGAAGCAAGTCTACAACGAGAGCAGATGCTTGCAGAGAAGCTTCAGGAAAACATAAAAAATATTGAGAAGCAGTCCTCACCAGTTGAGGAGTTATCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGGCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGACTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCCAAGGAATCAGAATTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTGTCCACCACAAAACTTGACCGGGAACAGCGACATCTGTTGGATGTCATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTGATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTCGTAAAACATGTTCTGCAAACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGCATAGCAGATGATGTTCCTATAGAGGTCATCGGAGACGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAATGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTGTACGTGTTACCATATCCACTCGTTGGGAAAGGAGATGAATGCCATAAGAAATCAACGGCTGATAACTCAACAGTTCCAGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGGCTTTTGTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCTCCAGGAACCCCAAGCAAGAGTGAAACCACAATGAACGGAAATAGAGAGAACAAATCTTGTTCACCTGAAACGACGGTATGGATACGCTGCGATGTATACGACACAGGAATTGGAATACCAGAGAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGACCACGCTCGAAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTACCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCCTACAAGGTTTCAACCACCTGCAGTCCTTCCGACGATTCCGATGAGCTCTCAGACGACGACTCCACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTGTCATCTTCTAATGGATCCACAAGGATCCCTAACTCATTGTTACATACAACTGGCTATCCCAGCTCAACCAAACTCAATGGATTTGCTGAAGATTCTTATCCTATTCCCTCAAACAACATCACACCACAAGAGACTGCTTCTTTTAGAGATGCCCGTTCCACCAATGCCATAGTAACCTCAAGCGAATCGCAATGTTCATCAAGTCAGATCAACTCAAATCTCGATAACGAGAAATCCGCTCATGGAGAGAACCGAAATCAACCCGACACAACCGCTCAGACTCAAAATGCTAGTGTGAATTCCCTTCACAAGCAAGAAGATGGATTGGAAAAGCCAGGTAATAAACTTCAAAAAACAGACCAGGGGAAAGAGAGATCCGATGCAAGTGCCCACTGCAAAACTAGCAGCAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACTAACGGAGTTGAAGCTGTTCGTGCAGTTCAACGGCGTTCTTACGATCTCATTCTCATGGATGTATTTATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACGGGGACCTGGGAGGCGGCTGTAAATGCTGGTATAGAGCCAACTACACCTCGTTGGACTCCTTCCTCCTCCTGCAACAAAATGCCCATCATTGCTATGACAGCGAATACGTTGTCAGAAAGCGCAGATGAGTGCTATGAAAATGGTATGGACTCGTTCGTATCAAAGCCAATCACCTTTCAAAAGTTGAAAGAATGTCTTGAACAATATTTACCACAACGCCCATTGTAA 3012 42.23 MVCEMETDVIEDMDIEALPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDFIVQNKRVEIDAEYDTVTYWKQRTMDLEKLLEASLQREQMLAEKLQENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKTGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPLVGKGDECHKKSTADNSTVPVNGLQEGTCLPAPQNGFCGQKHGDRNHLHCDAPGTPSKSETTMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDDSTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLLHTTGYPSSTKLNGFAEDSYPIPSNNITPQETASFRDARSTNAIVTSSESQCSSSQINSNLDNEKSAHGENRNQPDTTAQTQNASVNSLHKQEDGLEKPGNKLQKTDQGKERSDASAHCKTSSSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGVEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGTWEAAVNAGIEPTTPRWTPSSSCNKMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100332118 100339956 + Tan0000942.1 Tan01g3520 740944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3520 1003 Coils Coil 181 215 - -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 767 850 - -
Tan01g3520 1003 FunFam Histidine kinase 5 213 348 - -
Tan01g3520 1003 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 670 IPR003594 -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 814 840 - -
Tan01g3520 1003 Gene3D - 853 998 - -
Tan01g3520 1003 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Tan01g3520 1003 Coils Coil 92 112 - -
Tan01g3520 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 767 787 - -
Tan01g3520 1003 SMART HKATPase_4 482 672 IPR003594 -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 795 813 - -
Tan01g3520 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Tan01g3520 1003 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160(InterPro)
Tan01g3520 1003 FunFam Histidine kinase 5 851 999 - -
Tan01g3520 1003 ProSiteProfiles Response regulatory domain profile. 858 998 IPR001789 GO:0000160(InterPro)
Tan01g3520 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 42 1001 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Tan01g3520 1003 CDD REC_hyHK_CKI1_RcsC-like 859 994 - -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 708 730 - -
Tan01g3520 1003 Gene3D - 367 435 - -
Tan01g3520 1003 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 Gene3D PAS domain 213 348 - -
Tan01g3520 1003 Gene3D - 436 676 IPR036890 -
Tan01g3520 1003 SMART REC_2 857 994 IPR001789 GO:0000160(InterPro)
Tan01g3520 1003 SUPERFAMILY CheY-like 857 1000 IPR011006 -
Tan01g3520 1003 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 MobiDBLite consensus disorder prediction 675 695 - -
Tan01g3520 1003 FunFam Putative histidine kinase 5 359 436 - -
Tan01g3520 1003 Coils Coil 342 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3520 Tan-Chr1:100332118 Tan11g1724 Tan-Chr11:17197435 7.00E-51 dispersed
Tan01g3520 Tan-Chr1:100332118 Tan01g3521 Tan-Chr1:100332118 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26500 PF02518 HATPase_c 6.40E-28 CL0025 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3520 - - - 0.0