Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3520 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGCTCTTCCTTCCATGTGGCCTGAGGATGTTGGACCAGATGTCAGAAAACAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCTACAATTGTTGATTTCAAGAGACTAATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCGATTTCCATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTTATTGTTCAAAATAAGAGAGTTGAAATTGATGCAGAGTATGACACAGTGACATACTGGAAGCAGCGAACCATGGATCTGGAAAAATTACTGGAAGCAAGTCTACAACGAGAGCAGATGCTTGCAGAGAAGCTTCAGGAAAACATAAAAAATATTGAGAAGCAGTCCTCACCAGTTGAGGAGTTATCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGGCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCTAGTTTGGAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGACTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCCAAGGAATCAGAATTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTGTCCACCACAAAACTTGACCGGGAACAGCGACATCTGTTGGATGTCATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTGATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTCGTAAAACATGTTCTGCAAACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGCATAGCAGATGATGTTCCTATAGAGGTCATCGGAGACGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAATGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTGTACGTGTTACCATATCCACTCGTTGGGAAAGGAGATGAATGCCATAAGAAATCAACGGCTGATAACTCAACAGTTCCAGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGGCTTTTGTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCTCCAGGAACCCCAAGCAAGAGTGAAACCACAATGAACGGAAATAGAGAGAACAAATCTTGTTCACCTGAAACGACGGTATGGATACGCTGCGATGTATACGACACAGGAATTGGAATACCAGAGAATGCATTACCAAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGACCACGCTCGAAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTACCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCCTACAAGGTTTCAACCACCTGCAGTCCTTCCGACGATTCCGATGAGCTCTCAGACGACGACTCCACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTGTCATCTTCTAATGGATCCACAAGGATCCCTAACTCATTGTTACATACAACTGGCTATCCCAGCTCAACCAAACTCAATGGATTTGCTGAAGATTCTTATCCTATTCCCTCAAACAACATCACACCACAAGAGACTGCTTCTTTTAGAGATGCCCGTTCCACCAATGCCATAGTAACCTCAAGCGAATCGCAATGTTCATCAAGTCAGATCAACTCAAATCTCGATAACGAGAAATCCGCTCATGGAGAGAACCGAAATCAACCCGACACAACCGCTCAGACTCAAAATGCTAGTGTGAATTCCCTTCACAAGCAAGAAGATGGATTGGAAAAGCCAGGTAATAAACTTCAAAAAACAGACCAGGGGAAAGAGAGATCCGATGCAAGTGCCCACTGCAAAACTAGCAGCAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGGCTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACTAACGGAGTTGAAGCTGTTCGTGCAGTTCAACGGCGTTCTTACGATCTCATTCTCATGGATGTATTTATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACGGGGACCTGGGAGGCGGCTGTAAATGCTGGTATAGAGCCAACTACACCTCGTTGGACTCCTTCCTCCTCCTGCAACAAAATGCCCATCATTGCTATGACAGCGAATACGTTGTCAGAAAGCGCAGATGAGTGCTATGAAAATGGTATGGACTCGTTCGTATCAAAGCCAATCACCTTTCAAAAGTTGAAAGAATGTCTTGAACAATATTTACCACAACGCCCATTGTAA 3012 42.23 MVCEMETDVIEDMDIEALPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDFIVQNKRVEIDAEYDTVTYWKQRTMDLEKLLEASLQREQMLAEKLQENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKTGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPLVGKGDECHKKSTADNSTVPVNGLQEGTCLPAPQNGFCGQKHGDRNHLHCDAPGTPSKSETTMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDDSTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLLHTTGYPSSTKLNGFAEDSYPIPSNNITPQETASFRDARSTNAIVTSSESQCSSSQINSNLDNEKSAHGENRNQPDTTAQTQNASVNSLHKQEDGLEKPGNKLQKTDQGKERSDASAHCKTSSSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKIDVVTNGVEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGTWEAAVNAGIEPTTPRWTPSSSCNKMPIIAMTANTLSESADECYENGMDSFVSKPITFQKLKECLEQYLPQRPL 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100332118 100339956 + Tan0000942.1 Tan01g3520 740944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3520 1003 Coils Coil 181 215 - -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 767 850 - -
Tan01g3520 1003 FunFam Histidine kinase 5 213 348 - -
Tan01g3520 1003 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 670 IPR003594 -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 814 840 - -
Tan01g3520 1003 Gene3D - 853 998 - -
Tan01g3520 1003 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Tan01g3520 1003 Coils Coil 92 112 - -
Tan01g3520 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 767 787 - -
Tan01g3520 1003 SMART HKATPase_4 482 672 IPR003594 -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 795 813 - -
Tan01g3520 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Tan01g3520 1003 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160(InterPro)
Tan01g3520 1003 FunFam Histidine kinase 5 851 999 - -
Tan01g3520 1003 ProSiteProfiles Response regulatory domain profile. 858 998 IPR001789 GO:0000160(InterPro)
Tan01g3520 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 42 1001 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Tan01g3520 1003 CDD REC_hyHK_CKI1_RcsC-like 859 994 - -
Tan01g3520 1003 MobiDBLite consensus disorder prediction 708 730 - -
Tan01g3520 1003 Gene3D - 367 435 - -
Tan01g3520 1003 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 Gene3D PAS domain 213 348 - -
Tan01g3520 1003 Gene3D - 436 676 IPR036890 -
Tan01g3520 1003 SMART REC_2 857 994 IPR001789 GO:0000160(InterPro)
Tan01g3520 1003 SUPERFAMILY CheY-like 857 1000 IPR011006 -
Tan01g3520 1003 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g3520 1003 MobiDBLite consensus disorder prediction 675 695 - -
Tan01g3520 1003 FunFam Putative histidine kinase 5 359 436 - -
Tan01g3520 1003 Coils Coil 342 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3520 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3520 Tan-Chr1:100332118 Tan11g1724 Tan-Chr11:17197435 7.00E-51 dispersed
Tan01g3520 Tan-Chr1:100332118 Tan01g3521 Tan-Chr1:100332118 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2314 . 28 1219 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1464.5
Tan01g2315 . 28 1152 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1345.1
Tan11g1724 . 23 986 Histidine Kinase Gene Family AT2G01830 73.0 0.0e+00 1339.3
Tan04g1702 . 20 1003 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1338.9
Tan06g1521 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan06g1522 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan02g0457 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan02g0458 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan05g0968 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0969 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0970 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan01g3520 . 1 998 Histidine Kinase Gene Family AT5G10720 58.3 6.8e-295 1010.7
Tan01g3521 . 1 961 Histidine Kinase Gene Family AT5G10720 57.5 1.0e-274 943.7
Tan01g2789 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.1 0.0e+00 1852.0
Tan01g2783 . 1 1134 Histidine Kinase Gene Family AT1G09570 72.0 0.0e+00 1645.9
Tan02g0487 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan02g0490 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan10g1077 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.3
Tan02g0489 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0488 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0491 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0492 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0493 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan10g1077 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Tan05g2567 . 31 1042 Histidine Kinase Gene Family AT2G18790 61.5 0.0e+00 1263.8
Tan01g2789 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1090.9
Tan02g0487 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan02g0490 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan01g2783 . 20 1071 Histidine Kinase Gene Family AT2G18790 51.5 1.9e-310 1062.8
Tan02g0489 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0488 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0487 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0490 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0489 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0488 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0491 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0492 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0493 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan10g1077 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.6 0.0e+00 1147.5
Tan01g2789 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Tan10g1077 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1708.0
Tan05g2567 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.1 0.0e+00 1303.9
Tan01g2789 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1138.3
Tan02g0487 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0490 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0489 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0488 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan05g2567 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1385.5
Tan10g1077 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1275.0
Tan02g0491 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0492 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0493 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26500 PF02518 HATPase_c 6.40E-28 CL0025 Tan TR