Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3523 ATGGGCTATCTGAATTCAGTATTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCTCCTGTAAGCGGCGGGGGACTAAGTCAGAACGGAAAGTTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGAGCTTCTATGGAAGATTTTTATGAAACACGAATAGATGGCGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGATGGTCATGGTGGAGCACGAGCTGCTGAATATGTGAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATATCAGATACCAAATCTGCCATAGCTGATGCGTACAACCACACCGACACAGAATTTCTGAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCAGGAGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGCGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCACGCTCGAGTTTCTTATACTTGCAAGTGATGGATTGTGGGATGTTGTCACTAATGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCGGCGAAGAGGTTGATGCTAGAAGCATATCAAAGAGGCAGTGCAGATAACATTACTTGTGTCGTCGTCCGTTTCTTGGCAAATCAAGGAAGTCCCTCTCGTGGAACTTCTGGGTAA 882 45.92 MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRASMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSTLEFLILASDGLWDVVTNEEAVAMTKPIQDPEEAAKRLMLEAYQRGSADNITCVVVRFLANQGSPSRGTSG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100383347 100388324 - Tan0002089.1 Tan01g3523 740947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3523 293 PANTHER PROTEIN PHOSPHATASE 30 279 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g3523 293 Gene3D - 26 285 IPR036457 -
Tan01g3523 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Tan01g3523 293 CDD PP2Cc 33 280 IPR001932 -
Tan01g3523 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Tan01g3523 293 FunFam probable protein phosphatase 2C 59 26 284 - -
Tan01g3523 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Tan01g3523 293 SMART PP2C_SIG_2 45 280 IPR001932 -
Tan01g3523 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Tan01g3523 293 SMART PP2C_4 24 278 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0142 Tan-Chr1:1319155 Tan01g3523 Tan-Chr1:100383347 1.80E-94 dispersed
Tan01g3523 Tan-Chr1:100383347 Tan11g1206 Tan-Chr11:9994268 5.80E-99 dispersed
Tan01g3523 Tan-Chr1:100383347 Tan02g0200 Tan-Chr2:1718196 7.00E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3523 K17506 - csv:101216117 571.622