Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3539 ATGCAGGCAGATCAGTCGGCAATAAGTTTGAGACCAGGCGGTGGCGGTGGCGTTCGTGGAAGCAGATTTGCTAATCCTCGCTTCGATTCATCCTCCGCCGATTCTTCGTCGCTTCGTCCTCATGGCGGCGCTGCGTCAGTTCTCAAGACTGGAGATCTACGGTTTGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGCTTCTGCAGCTTAGAGAGATTGCCACAGTTCCCGAGGATATCTTGAAGGTCAAAATAGAAGTCGACACTGAGATTGTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAGCATTCAGCAATCACAATCTCAAAGCCGTTACTTTGAGCCAGATAATCGAGATTGGCGTGGTCGATCCGGACAGTTACCTGCCTCAGCAGAGGAAGGATCTTGGGAGGCAATTCGTGAGGATAAGGATTTATCTGGACTATCCGAGTCGAGGTTGCATGACTCAAATAATAGGACCCATGTTTCTGGTAACCAAGGGGTCGGTACTACACCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTAAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTAAAAGGTATACTTAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAGGGTCAACTGATTGACTCTGGAATTGTATCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTCTGTGCTCTGACCTTAATGAGAAGCTTCCTCCATTTCCATCTGATGTTCCTGGAGAGAAAGATATCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGAGCACATCAGGTCAGAAATCGGGCAGTTGACTAATCCTGAGCATGAAATGGAAAGACGAGATAAAGAAAGAATGGTTAAGCTTCGAACTTTAGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTGACTGAAAGGATTATTCACCATATTGTTCTGGAGCTGTTGGGGTCTGACGTTAAAGCATGCCCTGCTGAGGAGAATGTTGAGGCTATTTGTCAATTTTTTAACACAATTGGTAAGCAGCTGGATGAGAGCCCAAAATCTCGGCGGGTCAATGACGTGTATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCTAATAAATGGATTCCTAGGCGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCTGAGAAGAATCTTGGGCTTCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAACGCCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCTGTTGCTCGACCTGGCTTTGGGGGTATGATGCCTGGAATGCCTCTTGGAACCAGGAAAATGCCTGGTATGCCTGGACTCGATTCGGACAATTGGGAGGTTCCTAGATCCCGATCAATGCCAAGGGGCGATAGCGGAGGCCATACTCAGGCATCTGTGCGTGCCCAGACACCATTAATCGGCAAAACAGCTTCCATTAATTCAAAATATCTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCATCTCCTGCCCGACCAAGTTCCATGCCTGGAACCCAGCCTGTCGCTCATAACCCTAGACCAGTTGCTCCTGTTGCATCCGCCATATCTTCTCCTCAGAAGCCACCAGCTCCTGCTGTAGTATCTAATTCTGCTGATCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTCAGTGTAAGAATTCTCGATGAAGCTCTACAGTGTGTGGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTATCATAGCACTTGAAAAAATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACCTGCTTCACAAGAATGTCTTGACTGCAAAGGATATAGGTACTGGGTGCCTTCTATACGGGTCAATGATGGATGATATCGGCATCGATCTACCAAAAGCGCCTAACAATTTTGGTGAGATTCTTGGGAAGTTAATATTGATCGGGGGTCTAGATTTCGCAGTTGTGAAGGAGATCCTTAAGAAGCTCGAAGACGACTATTTCCAGAAGTCCATTTTTGGTGGTGCTATGAAGATCATCAACTCTAGCCCTTCTGGAAAAGGAATTCTGGCAACTCAAAGTGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2331 46.2 MQADQSAISLRPGGGGGVRGSRFANPRFDSSSADSSSLRPHGGAASVLKTGDLRFEGRERIQYTRDQLLQLREIATVPEDILKVKIEVDTEIVGEDQTWARAESIQQSQSQSRYFEPDNRDWRGRSGQLPASAEEGSWEAIREDKDLSGLSESRLHDSNNRTHVSGNQGVGTTPALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDVLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPPFPSDVPGEKDITFKRVLLNICQEAFEGAEHIRSEIGQLTNPEHEMERRDKERMVKLRTLGNIRLIGELLKQKMVTERIIHHIVLELLGSDVKACPAEENVEAICQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANKWIPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGLSPGGFPVARPGFGGMMPGMPLGTRKMPGMPGLDSDNWEVPRSRSMPRGDSGGHTQASVRAQTPLIGKTASINSKYLPQGSGGVITGKTSALLQGSAASPARPSSMPGTQPVAHNPRPVAPVASAISSPQKPPAPAVVSNSADLHKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLIIALEKIPPCVDPVVKLLEHLLHKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVKEILKKLEDDYFQKSIFGGAMKIINSSPSGKGILATQSVEIQACETLLA 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100545887 100551599 + Tan0018994.1 Tan01g3539 740963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3539 776 MobiDBLite consensus disorder prediction 137 159 - -
Tan01g3539 776 SMART if4_15 197 422 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan01g3539 776 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 49 774 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Tan01g3539 776 Pfam MA3 domain 612 723 IPR003891 -
Tan01g3539 776 Gene3D - 606 763 - -
Tan01g3539 776 Gene3D - 188 423 - -
Tan01g3539 776 MobiDBLite consensus disorder prediction 102 171 - -
Tan01g3539 776 ProSiteProfiles MI domain profile. 610 732 IPR003891 -
Tan01g3539 776 SMART ma3_7 611 723 IPR003891 -
Tan01g3539 776 FunFam Eukaryotic translation initiation factor isoform 4G-2 188 423 - -
Tan01g3539 776 SUPERFAMILY ARM repeat 190 424 IPR016024 -
Tan01g3539 776 SUPERFAMILY ARM repeat 608 762 IPR016024 -
Tan01g3539 776 MobiDBLite consensus disorder prediction 25 39 - -
Tan01g3539 776 MobiDBLite consensus disorder prediction 1 45 - -
Tan01g3539 776 Pfam MIF4G domain 197 422 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3539 Tan-Chr1:100545887 Tan10g0463 Tan-Chr10:3814604 1.20E-53 dispersed
Tan01g3539 Tan-Chr1:100545887 Tan01g3540 Tan-Chr1:100545887 0.00E+00 tandem
Tan01g3539 Tan-Chr1:100545887 Tan09g1578 Tan-Chr9:67587282 1.40E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3539 K03260 - csv:101211356 1268.06