Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3540 ATGCAGGCAGATCAGTCGGCAATAAGTTTGAGACCAGGCGGTGGCGGTGGCGTTCGTGGAAGCAGATTTGCTAATCCTCGCTTCGATTCATCCTCCGCCGATTCTTCGTCGCTTCGTCCTCATGGCGGCGCTGCGTCAGTTCTCAAGACTGGAGATCTACGGTTTGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGCTTCTGCAGCTTAGAGAGATTGCCACAGTTCCCGAGGATATCTTGAAGGTCAAAATAGAAGTCGACACTGAGATTGTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAGCATTCAATCACAATCTCAAAGCCGTTACTTTGAGCCAGATAATCGAGATTGGCGTGGTCGATCCGGACAGTTACCTGCCTCAGCAGAGGAAGGATCTTGGGAGGCAATTCGTGAGGATAAGGATTTATCTGGACTATCCGAGTCGAGGTTGCATGACTCAAATAATAGGACCCATGTTTCTGGTAACCAAGGGGTCGGTACTACACCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTAAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTAAAAGGTATACTTAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAGGGTCAACTGATTGACTCTGGAATTGTATCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTCTGTGCTCTGACCTTAATGAGAAGCTTCCTCCATTTCCATCTGATGTTCCTGGAGAGAAAGATATCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGAGCACATCAGGTCAGAAATCGGGCAGTTGACTAATCCTGAGCATGAAATGGAAAGACGAGATAAAGAAAGAATGGTTAAGCTTCGAACTTTAGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTGACTGAAAGGATTATTCACCATATTGTTCTGGAGCTGTTGGGGTCTGACGTTAAAGCATGCCCTGCTGAGGAGAATGTTGAGGCTATTTGTCAATTTTTTAACACAATTGGTAAGCAGCTGGATGAGAGCCCAAAATCTCGGCGGGTCAATGACGTGTATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCTAATAAATGGATTCCTAGGCGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCTGAGAAGAATCTTGGGCTTCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAACGCCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCTGTTGCTCGACCTGGCTTTGGGGGTATGATGCCTGGAATGCCTCTTGGAACCAGGAAAATGCCTGGTATGCCTGGACTCGATTCGGACAATTGGGAGGTTCCTAGATCCCGATCAATGCCAAGGGGCGATAGCGGAGGCCATACTCAGGCATCTGTGCGTGCCCAGACACCATTAATCGGCAAAACAGCTTCCATTAATTCAAAATATCTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCATCTCCTGCCCGACCAAGTTCCATGCCTGGAACCCAGCCTGTCGCTCATAACCCTAGACCAGTTGCTCCTGTTGCATCCGCCATATCTTCTCCTCAGAAGCCACCAGCTCCTGCTGTAGTATCTAATTCTGCTGATCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTCAGTGTAAGAATTCTCGATGAAGCTCTACAGTGTGTGGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTATCATAGCACTTGAAAAAATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACCTGCTTCACAAGAATGTCTTGACTGCAAAGGATATAGGTACTGGGTGCCTTCTATACGGGTCAATGATGGATGATATCGGCATCGATCTACCAAAAGCGCCTAACAATTTTGGTGAGATTCTTGGGAAGTTAATATTGATCGGGGGTCTAGATTTCGCAGTTGTGAAGGAGATCCTTAAGAAGCTCGAAGACGACTATTTCCAGAAGTCCATTTTTGGTGGTGCTATGAAGATCATCAACTCTAGCCCTTCTGGAAAAGGAATTCTGGCAACTCAAAGTGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2328 46.18 MQADQSAISLRPGGGGGVRGSRFANPRFDSSSADSSSLRPHGGAASVLKTGDLRFEGRERIQYTRDQLLQLREIATVPEDILKVKIEVDTEIVGEDQTWARAESIQSQSQSRYFEPDNRDWRGRSGQLPASAEEGSWEAIREDKDLSGLSESRLHDSNNRTHVSGNQGVGTTPALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDVLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPPFPSDVPGEKDITFKRVLLNICQEAFEGAEHIRSEIGQLTNPEHEMERRDKERMVKLRTLGNIRLIGELLKQKMVTERIIHHIVLELLGSDVKACPAEENVEAICQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANKWIPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGLSPGGFPVARPGFGGMMPGMPLGTRKMPGMPGLDSDNWEVPRSRSMPRGDSGGHTQASVRAQTPLIGKTASINSKYLPQGSGGVITGKTSALLQGSAASPARPSSMPGTQPVAHNPRPVAPVASAISSPQKPPAPAVVSNSADLHKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLIIALEKIPPCVDPVVKLLEHLLHKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVKEILKKLEDDYFQKSIFGGAMKIINSSPSGKGILATQSVEIQACETLLA 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100545887 100551599 + Tan0018994.2 Tan01g3540 740964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3540 775 SMART ma3_7 610 722 IPR003891 -
Tan01g3540 775 FunFam Eukaryotic translation initiation factor isoform 4G-2 187 422 - -
Tan01g3540 775 Gene3D - 605 762 - -
Tan01g3540 775 SUPERFAMILY ARM repeat 189 423 IPR016024 -
Tan01g3540 775 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 56 773 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Tan01g3540 775 SUPERFAMILY ARM repeat 607 761 IPR016024 -
Tan01g3540 775 Gene3D - 187 422 - -
Tan01g3540 775 MobiDBLite consensus disorder prediction 25 39 - -
Tan01g3540 775 MobiDBLite consensus disorder prediction 1 45 - -
Tan01g3540 775 MobiDBLite consensus disorder prediction 136 158 - -
Tan01g3540 775 Pfam MA3 domain 611 722 IPR003891 -
Tan01g3540 775 Pfam MIF4G domain 196 421 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan01g3540 775 ProSiteProfiles MI domain profile. 609 731 IPR003891 -
Tan01g3540 775 SMART if4_15 196 421 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan01g3540 775 MobiDBLite consensus disorder prediction 101 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3540 Tan-Chr1:100545887 Tan09g1578 Tan-Chr9:67587282 6.80E-280 dispersed
Tan01g3539 Tan-Chr1:100545887 Tan01g3540 Tan-Chr1:100545887 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3540 K03260 - csv:101211356 1263.83