Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3545 ATGGGTATATACCTCAGCAATCCCAAAACTGAGAAGTCCTCTGAAGATGGTGAGAATAGACGGCTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCCTGATCTGGATGCTTGCACTTCCTTCTTCGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTTCTTACATCAGCAAGTGAAGAAAAATGAAGCTTATGCCGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATACTTAAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCCGTTCTAGGTGACAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCACCAAGAAGCAGTGATGCAAATGACCAGGCTGATGATTGGACTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCAACTTCGGGATGTACAGCTTGTGTTGCAATTATTAGAAATAACAAGCTTCTTGTTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCAAGAAAGGGCCAGGCTCACAGTCTCTCTAGGGATCACAAGCCTGATCTTGAGGCTGAGAGGGACAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGCGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAGGCAAATTATCACGGCAAATCCTGATGTAACCACTGTTGAGCTTTGCGATGATGACGAGTTTATTGTGATAGCCTGTGATGGGATATGGGATTGCATGTCTAACCAGCATCTGGTAGATTTTATACATGAACAGCTAAAGTCAGAAAGTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAAGTGTTTGGCACCCACGGCTGGTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGCTTAAGAAAGATATCCAATCAAACTCCTCTGTCGACGAGCAAACTTCACCCGCTACTATCGCAACCGAACCAGATAGTACCGAATCAAAGGAAAGAGATGAATCGAACTAG 1092 43.96 MGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAIPDLDACTSFFGVYDGHGGKVVAKFCAKFLHQQVKKNEAYAAGDIGTSVQKAYLRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPRSSDANDQADDWTFEEGPHSDFSGPTSGCTACVAIIRNNKLLVANAGDSRCVLSRKGQAHSLSRDHKPDLEAERDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAERQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQHLVDFIHEQLKSESKLSVVVERVLDKCLAPTAGGEGCDNMTMILVQLKKDIQSNSSVDEQTSPATIATEPDSTESKERDESN 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100557282 100567291 + Tan0004998.5 Tan01g3545 740969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3545 363 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Tan01g3545 363 Gene3D - 1 329 IPR036457 -
Tan01g3545 363 PANTHER PROTEIN PHOSPHATASE 2C 19 329 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan01g3545 363 MobiDBLite consensus disorder prediction 335 351 - -
Tan01g3545 363 CDD PP2Cc 23 328 IPR001932 -
Tan01g3545 363 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Tan01g3545 363 MobiDBLite consensus disorder prediction 335 363 - -
Tan01g3545 363 SMART PP2C_4 13 326 IPR001932 -
Tan01g3545 363 Pfam Protein phosphatase 2C 135 313 IPR001932 -
Tan01g3545 363 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Tan01g3545 363 SUPERFAMILY PP2C-like 3 329 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3543 Tan-Chr1:100557282 Tan01g3545 Tan-Chr1:100557282 1.40E-211 dispersed
Tan01g3545 Tan-Chr1:100557282 Tan01g3547 Tan-Chr1:100557282 1.40E-211 dispersed
Tan01g3544 Tan-Chr1:100557282 Tan01g3545 Tan-Chr1:100557282 1.40E-211 tandem
Tan01g3545 Tan-Chr1:100557282 Tan01g3546 Tan-Chr1:100557282 2.40E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3545 K17499 - csv:101211604 660.988