Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3546 ATGGGTATATACCTCAGCAATCCCAAAACTGAGAAGTCCTCTGAAGATGGTGAGAATAGACGGCTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCCTGATCTGGATGCTTGCACTTCCTTCTTCGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTTCTTACATCAGCAAGTGAAGAAAAATGAAGCTTATGCCGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATACTTAAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCCGTTCTAGGTGACAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCACCAAGAAGCAGTGATGCAAATGACCAGGCTGATGATTGGACTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCAACTTCGGGATGTACAGCTTGTGTTGCAATTATTAGAAATAACAAGCTTCTTGTTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCAAGAAAGGGCCAGGCTCACAGTCTCTCTAGGGATCACAAGCCTGATCTTGAGGCTGAGAGGGACAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGCGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAGGCAAATTATCACGGCAAATCCTGATGTAACCACTGTTGAGCTTTGCGATGATGACGAGTTTATTGTGATAGCCTGTGATGGGATATGGGATTGCATGTCTAACCAGCATCTGGTAGATTTTATACATGAACAGCTAAAGTCAGTAAGTAAAATATTTTAA 897 43.14 MGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAIPDLDACTSFFGVYDGHGGKVVAKFCAKFLHQQVKKNEAYAAGDIGTSVQKAYLRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPRSSDANDQADDWTFEEGPHSDFSGPTSGCTACVAIIRNNKLLVANAGDSRCVLSRKGQAHSLSRDHKPDLEAERDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAERQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQHLVDFIHEQLKSVSKIF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100557282 100567291 + Tan0004998.6 Tan01g3546 740970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3546 298 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Tan01g3546 298 SMART PP2C_4 13 297 IPR001932 -
Tan01g3546 298 Gene3D - 1 297 IPR036457 -
Tan01g3546 298 ProSiteProfiles PPM-type phosphatase domain profile. 23 298 IPR001932 -
Tan01g3546 298 PANTHER PROTEIN PHOSPHATASE 2C 19 289 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan01g3546 298 CDD PP2Cc 23 295 IPR001932 -
Tan01g3546 298 SUPERFAMILY PP2C-like 3 292 IPR036457 -
Tan01g3546 298 Pfam Protein phosphatase 2C 135 293 IPR001932 -
Tan01g3546 298 Pfam Protein phosphatase 2C 23 104 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3546 Tan-Chr1:100557282 Tan01g3548 Tan-Chr1:100557282 4.60E-176 dispersed
Tan01g3545 Tan-Chr1:100557282 Tan01g3546 Tan-Chr1:100557282 2.40E-174 tandem
Tan01g3546 Tan-Chr1:100557282 Tan01g3547 Tan-Chr1:100557282 1.90E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3546 K17499 - csv:101211604 570.852