Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3560 ATGGGGACATCGGGTGCCAAGGATGATATAGAGATGAATAGTGAGCCGGAAGACTTATCACCTGGAACTGATATGGATACAGATGATGATGATTATTCTGAGCCAGTTAACATTCGTGATCTAGGGGAAGCATTTTTAAAGGATTTCTGTAAGAAGTCATCAATGGCATTTTTTAATGAGTACGGCCTTATCAGTCACCAAATTCACTCGTACAATGACTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTACTTTGGTGAGATTGTAGTTCAGCCAGGGTATGACCCCTCGAAGAAAGGAGATGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTTGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGACATGCTCGGCTTCAGAACATGACTTATTCATCAAGGATGAAAATGAATATTAATGTAGAGGTGTATACTCAAAGGTTAGTCAGCAGTGACAAATTTAAAACGGGAAAAGATCAATATGTCGACAAGGATCGTTTAAATCAAGATAACAGGGATATATTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGAAGAGCAGAAACGTGACTGTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTATTGCTCAAGAGCAAATTTGTTTGAGAAGACTCTGGATTTCTAATATTCAAGGTTGGACTGTGGCATACAGATCAGAAATTAAGAGAAATAGACTAATTATTAGACTAGTTGGAAATTCCAAGTCTGACGAACTAACAAGCAAGGAAAAAGTCCTCAATGTATATTTCTTGTCTACAGAAATTCCTGTGTGGATTTTATTCTTTGCACTTGGTGTTTCATCGGACAGAGAAATAGTAGATTTAATTGATTTTGGCAGAGATGATCCAACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTCGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCTCTGAATTTTTTGGAGAATGAGATTAAAAAGACCAGCTTCCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTCTATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGTTATATGGTTAAATGTCTCCTGCAAGCCTATACTGGCCGTAGGAAATGTGATAACAAGGATGATTTTCGCAATAAGAGGTTTGAGTTGGCTGGAGAATTGCTTGAAAGAGAGATTAAAGTACATATCGCACATGCGCGTAGGCGTATGGAAAAGGCTTTGCAAAGGGACCTCTATGGAGATCGTGATGTTCGTCCAATCGAACACTATTTTGATGCTTCCATAATTACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTCAAGAGGATGGAAAGGATTTCAGGTGTGGTGGCAACACTTGGTCGTGCTAATCCCCTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTTGGTGATGCGAGATACCCGCATCCTTCTCATTGGGGAAGGGTTTGCTTTCTCTCCACCCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCATCACAGGACTTGTAAGCTTGAACACATCAAAACCCATAGTTCCCACATTGTTTCGCTGTGGGATGGAGAATTTGGTGGACGATACATCTACTTTTCTTAGTGGGAAACACAAAATTTTTCTCAATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGCAACGAAAGTGAGACGCAAGCGACGAAGGAATCCATTACTGCATCAGGTAGAAGTCAAAAGAGATGAACAACTGAAAGAAGTACGTGTATTTTCTGACGCTGGAAGGATATTACGTCCTCTCTTAGTTGTGGAGAACTTAAACAGGATTGATAAGTCTAAGGGGGAAAGCTACACTTTTCAATCACTTTTGGACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATATTATGGAAGATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATACGTCATTTTTATTAGGTTTAAGCTGTGGACTTGTCCCGTTTGCGAATCATGACCATGCTAGGAGGGCTCTGTTTCAATCCCAGAAACACTCTAATCAAGCTATTGGATTTTCAACTACCAATTCTAATTTTCGTGTGGATACTTTATCTCACCAGTTACACTATCCACAGAGGCCACTTTTTCGTACTATGGCTGCTGATTGCCTTGGGACACCTGGATACCTGTCATCTCACACTGGGATACTACCGAAACCCGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCACCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACCGGGCCTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATATCCGGAGTTACAAGGCTGAAGTAGATAATAAAGAATCCTCCGAAAAGAGGAGGAAATCTGATGATGCAATAAATTTTGGTAAGACTCAAAGTAAAATTGGGAGAGTTGACAGCTTAGATGATGATGGCTTCCCTTACATCGGTGCAAACTTGCAAAGTGGAGACATTGTCATTGGTAGGTGTGCGGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGTATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTTTGCTGTTGTATGCCTGAGACAGGTTCGTTCACCATGTCTCGGAGACAAGTTTTCGAGTATGCACGGACAAAAGGGAGTTCTGGGCTTTTTGGAGTCTCAAGAGAATTTCCCCTTCACCATTCAGGGGATAGTTCCAGATATTGTTATAAACCCACATGCTTTTCCTTCGCGACAGACTCCTGGCCAACTATTGGAAGCTGCTCTCGGGAAAGGGATTGCTTCTGGCGGTTCGCTGAAATATGCGACTCCTTTTTCCACTCCTTCTGTTGATGCCATTACAGATCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGGAGTGAGAGGGTGTACAATGGCCGAACTGGTGAAATGATGCGGTCGCTCATATTCATGGGTCCAACATTCTACCAGCGTTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAATACCGGCCCCGTCCACCCTCTCACACGCCAACCAGTTGCCGACCGAAAGCGTTTTGGTGGGATCAAGTTCGGGGAGATGGAACGTGACTGTCTTATAGCTCACGGCGCCTCAGCCAACTTACACGAACGCTTGTTTACCCTCAGTGACTCCTCCCAGATGCATGTTTGCCAGAAATGCAAAAATGTTGCAAATGTGATCCAACGATCGGTGGCGGGTGGTCGTAAGATACGGGGTCCATACTGTCGGGTTTGCGAGTCGGTAGATGACATCGTGAGGGTAAATGTACCTTATGGAGCCAAGTTGTTGTGCCAGGAGCTCTTCAGCATGGGGATCAATCTCAAGTTTGAAACACAAGTGTGTTGA 3582 42.77 MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDDYSEPVNIRDLGEAFLKDFCKKSSMAFFNEYGLISHQIHSYNDFIKSGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVSSDKFKTGKDQYVDKDRLNQDNRDIFIGRLPVMVNSDLCWMKEEQKRDCEFDHGGYFLIKGAEKIFIAQEQICLRRLWISNIQGWTVAYRSEIKRNRLIIRLVGNSKSDELTSKEKVLNVYFLSTEIPVWILFFALGVSSDREIVDLIDFGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALNFLENEIKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNKDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSITGLVSLNTSKPIVPTLFRCGMENLVDDTSTFLSGKHKIFLNGEWVGVCEDSLSFATKVRRKRRRNPLLHQVEVKRDEQLKEVRVFSDAGRILRPLLVVENLNRIDKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHIMEDEGTTKYSHCELDTSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMAADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVCLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVANVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQVC 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100612728 100620465 - Tan0019367.1 Tan01g3560 740984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3560 1193 Pfam RNA polymerase Rpb2, domain 5 666 709 IPR007647 GO:0006351(InterPro)
Tan01g3560 1193 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 48 1190 - -
Tan01g3560 1193 Pfam RNA polymerase Rpb2, domain 2 287 415 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 MobiDBLite consensus disorder prediction 1 33 - -
Tan01g3560 1193 Pfam RNA polymerase Rpb2, domain 4 590 651 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 Gene3D - 720 1076 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 Pfam RNA polymerase Rpb2, domain 7 1092 1190 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 Gene3D RNA polymerase alpha subunit dimerisation domain 1077 1191 - -
Tan01g3560 1193 Gene3D - 750 939 IPR014724 GO:0003899(InterPro)
Tan01g3560 1193 Gene3D - 56 236 - -
Tan01g3560 1193 Gene3D - 406 589 - -
Tan01g3560 1193 Pfam RNA polymerase beta subunit 62 453 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 Pfam RNA polymerase Rpb2, domain 3 494 553 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 56 1190 IPR015712 GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Tan01g3560 1193 FunFam DNA-directed RNA polymerase subunit beta 55 238 - -
Tan01g3560 1193 FunFam DNA-directed RNA polymerase subunit beta 1077 1191 - -
Tan01g3560 1193 Gene3D RNA polymerase Rpb2, domain 2 244 405 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 FunFam DNA-directed RNA polymerase subunit beta 821 939 - -
Tan01g3560 1193 Pfam RNA polymerase Rpb2, domain 6 720 1090 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Tan01g3560 1193 CDD RNA_pol_B_RPB2 63 1189 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Tan01g3560 1193 FunFam DNA-directed RNA polymerase subunit beta 405 593 - -
Tan01g3560 1193 ProSitePatterns RNA polymerases beta chain signature. 943 955 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3560 K16252 - - csv:101212812 2268.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3560 Tan-Chr1:100612728 Tan01g3562 Tan-Chr1:100612728 0.00E+00 dispersed
Tan01g3560 Tan-Chr1:100612728 Tan01g3561 Tan-Chr1:100612728 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32