Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3565 ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCAATGGCAAGAAGCTTGAAGATATTGTTCCATCGTCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGAAACCCTGCTCACTCAGATTAAGACTGGATTTGAAGAGGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCGAAGAACTAG 483 48.03 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDETLLTQIKTGFEEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100628967 100631867 - Tan0019482.1 Tan01g3565 740989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3565 160 MobiDBLite consensus disorder prediction 1 21 - -
Tan01g3565 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Tan01g3565 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Tan01g3565 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Tan01g3565 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Tan01g3565 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Tan01g3565 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Tan01g3565 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Tan01g3565 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Tan01g3565 160 Gene3D - 1 85 IPR014722 -
Tan01g3565 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Tan01g3565 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Tan01g3565 160 Gene3D - 86 159 IPR012340 -
Tan01g3565 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Tan01g3565 160 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3565 Tan-Chr1:100628967 Tan04g1035 Tan-Chr4:9236948 1.30E-81 dispersed
Tan01g3565 Tan-Chr1:100628967 Tan02g2761 Tan-Chr2:95980929 3.90E-81 wgd
Tan01g3565 Tan-Chr1:100628967 Tan09g1562 Tan-Chr9:67507884 4.90E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3565 K03263 - vvi:100852874 314.694