Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3571 ATGGAGGAGAGGCATGTTCTGTTTGATAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCGAAGGTGTATTATGGAAAAGAATTGGAGTCTGGTGAAAGTGTGGCGATTAAGGTTTTAAACAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCGAACATCGTTGAGTTGAGAGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAGCTTTTTGCCAAAGTTGCAAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCCGTTGATTACTGTCACAGCCGTGGAGTATCTCACCGCGATTTGAAGCCGGAGAATCTGTTGCTGGACGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCCCTACCGGAACAGCTTCGAAATGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCGTATGTCGCACCGGAGGTACTGAGAAGAAAGGGCTACGATGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTCCAGGATGAGAATATCATGACGATGTATAAGAAGGTTTTCAAGGCCGAATTCGAATGTCCGCCGTGGTTCTCCGCCGAATCGAAGCGTTTAATTTCAAAGATCCTCGTTGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGAGAGTTCCTTGGTTCCGGAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAGAGAAATAATCGCAGCGAAAACAGAGGATTCCGATTCCGAGAGTCCGAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAGTTGATATCGTCGATGTCGTCCGGATTCGATCTATCGAGCTTATTCGAGAACAAAAGGAAGACAGGATCGATGTTCACATCGAGATGCTCGGTGTCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTATCGGAAGTGAAAGATTTCAAGCTCCGGCTGCAAGGTGAGGCGGAGGGACGTAAAGGAAAGCTATCAGTGACGGCGGAGGTGTTCGAGATAGCGCCGGAAGTTGCCATAGTCGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGGCCGGCGTTGAAAGACATTGTTTGGACGTGGCAAGGTGATTGTGTCCCTAGCGTTGACGGAGGTAACGGCCAATTTGACGGTGACGAATTTTTGTGA 1332 48.27 MEERHVLFDKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELREVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMREIIAAKTEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKRLSFKVSEVKDFKLRLQGEAEGRKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPSVDGGNGQFDGDEFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100695837 100698081 - Tan0015877.1 Tan01g3571 740995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3571 443 CDD CIPK_C 302 416 - -
Tan01g3571 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Tan01g3571 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Tan01g3571 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Tan01g3571 443 CDD STKc_SnRK3 10 264 - -
Tan01g3571 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3571 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Tan01g3571 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3571 443 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Tan01g3571 443 SUPERFAMILY Protein kinase-like (PK-like) 7 292 IPR011009 -
Tan01g3571 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Tan01g3571 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3571 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan01g3571 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3571 443 FunFam Non-specific serine/threonine protein kinase 4 298 - -
Tan01g3571 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Tan01g3571 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3571 Tan-Chr1:100695837 Tan03g0726 Tan-Chr3:62935361 4.60E-140 dispersed
Tan07g1149 Tan-Chr7:40503015 Tan01g3571 Tan-Chr1:100695837 1.80E-59 transposed
Tan01g3571 Tan-Chr1:100695837 Tan04g2507 Tan-Chr4:83996300 9.20E-173 wgd
Tan01g3571 Tan-Chr1:100695837 Tan09g1553 Tan-Chr9:67372585 5.50E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67087 PF00069 Pkinase 4.10E-74 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3571 - - - 0.0