Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3577 ATGCTTCTTTTTAAGCAGATAAACCAGACGGATTTTACTGAGATGGCATGGGAAGGCATAGTTGGTGCGGTTGATACTGCACGATTGAATAAACAACAAGTCGTTGAGAGTGAGCATTTAATGAAAGCACTTCTTGAACAGAAGGATGGTTTAGCTCGGAGAATATTTTCTAAGGCCGGACTTGACAATTCGTCGGTTTTGCAGGCTACAGTTGATTTTATAGCTCAACAGCCAAAGGTAATGGGCGAAACTAGTGGTCCAATAATAGGCACACATCTAAGTTTGATTCTGGACAATGCTCGAAAACATAAAAAAGAAATGGGAGATGATTTTCTATCTGTGGAACATTTTGTGTTAGCCTTCCATTCAGACAAGAGATTTGGGCAGCAACTATTTAAGAACTTGCAACTTAGTGAAAAGGATTTGAAGGATGCTGTTGATGCTGTCCGTGGAAACCAGAGAGTAACTGATCAAAATCCTGAAGGAAAGTATGAAGCTCTTGACAAGTACGGGACTGACTTGACTGAATTTGCTAGACGTGGTAAACTCGATCCCGTTATAGGAAGAGATGATGAAATACGACGATGCATTCAAATTCTATCAAGGAGAACAAAAAACAATCCTGTGATCATTGGTGAGCCAGGTGTTGGGAAAACTGCAATCGCTGAAGGATTAGCTCAACGTATTGTGCGAGGGGATGTTCCGGAACCATTGTTGAATAGAAAGTTGATATCTCTGGACATGGGTTCTCTGGTTGCTGGTGCAAAATACCGTGGAGATTTCGAGGAAAGATTGAAGGCTGTGCTGAAGGAAGTTACTGCTTCAAATGGGCAAATTATCTTGTTCATAGATGAGATTCATACAGTTGTTGGTGCAGGGGCTACGGGTGGTGCCATGGATGCTGGCAACCTCTTGAAACCCATGCTGGGTCGAGGTGAACTACGATGTATTGGTGCAACTACATTGAAGGAGTATAGAAAATACATTGAGAAAGATCCTGCCCTCGAACGTAGGTTTCAACAAGTGTTTTGTGGCCAACCATCTGTTGAAGACACAATCTCTATTCTCCGTGGGTTACGAGAGCGCTATGAGCTACATCATGGTGTGAAGATATCTGATAGTGCACTTGTTTCAGCAGCAGTTCTAGCAGGCAGATACATCACGGAACGATTTTTACCCGACAAAGCCATTGATGTTGTTGATGAAGCTGCTGCAAAGTTGAAGATGGAGATTACTTCTAAGCCCACTGAGTTGGATGAGATCGATAGAGCAGTTTTGAAGTTGGAGATGGAGAAGCTCTCTTTGAAAAATGATACAGATAAAGCAAGCAAAGAAAGGTTAAGCAAATTAGAGCAAGATCTGAGTTCACTTAAACAAAAACAGAAAGAATTGACGGAACAATGGGATCGTGAAAAGACTTTCATGACTCGTATACGATCTATTAAGGAAGAGATTGATAGAGTTAACCTTGAGATGGAAGCTGCTGAAAGAGAGTTTGATTTGAATCGTGCTGCTGAGCTCAAATATGGCACTCTAATATCGCTTCACCGCCAATTAGAAGAGGCCGAAAAGAATCTACAGGACTTCCGAAAGTCTGGAATTTCTTTGCTTCGTGAAGAGGTCACAGATCTTGATATTGCAGAGATTGTAAGCAAATGGACTGGCATACCTTTGTCCAACCTCCAACAATCTGAGAGGGATAAGCTAGTTTTACTAGAACAAGTCCTCCATCAGAGAGTAGTTGGTCAAGATATTGCAGTAAAATCAGTTGCAGATGCTATTCGGCGTTCAAGAGCAGGACTTTCCGATCCAAATCGACCCATAGCCAGCTTCATGTTTATGGGACCAACTGGAGTGGGAAAAACTGAGCTTGCAAAAGCTCTGGCGGGCTATCTTTTCAACACTGAAAATGCTTTAGTTAGGATTGATATGAGTGAGTACATGGAAAAACATGCAGTATCTCGTTTGGTTGGGGCACCACCAGGTTATGTTGGTTATGAAGAAGGTGGGCAATTGACTGAAGTTGTTCGCCGAAGGCCTTATTCTGTGGTACTTTTTGATGAGATAGAGAAGGCCCATCATGATGTATTCAACATTTTGCTACAATTATTGGATGATGGTAGGATAACGGATTCTCAGGGTAGAACCGTTAGTTTCACAAATTGTGTCATGATAATGACATCAAATATTGGTTCCCACTATATTCTTGATACTCTTAGTAACACAAAAGATAGTAAAGATGCAGTTTACGAGTTGATGAAAAAACAAGTGGTTGGATTGGCTAGACAGACTTTTCGGCCTGAGTTTATGAATCGAATTGATGAATATATCGTCTTCCAGCCTTTGGACGCCACCCAGATATGCAAGATTGTTGAAATACAGATCCAACGATTACGTGATAGACTCAAACAGAAGAACATCAATCTTCATTACACCAAAGAAGCTCTTGAGCTTCTAGGGACATTGGGTTTTGACCCCAACTATGGAGCAAGGCCGGTTAAGAGAATTATACAACAGCTGGTAGAAAATGAGATAGCAATGCAAGTATTGAGAGGTGACTTTCAGGAAGACGATTCAATCATTGTCGATGTCGATACATCTCCATCTGCCAAAGACCTACCTCCCCAAAAAAGATTGCGCATCAAGAAAATAGATAACAATTCTATCTCGGAGGCTATGGTTGCCAACGACTGA 2694 41.5 MLLFKQINQTDFTEMAWEGIVGAVDTARLNKQQVVESEHLMKALLEQKDGLARRIFSKAGLDNSSVLQATVDFIAQQPKVMGETSGPIIGTHLSLILDNARKHKKEMGDDFLSVEHFVLAFHSDKRFGQQLFKNLQLSEKDLKDAVDAVRGNQRVTDQNPEGKYEALDKYGTDLTEFARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATGGAMDAGNLLKPMLGRGELRCIGATTLKEYRKYIEKDPALERRFQQVFCGQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLAGRYITERFLPDKAIDVVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEQDLSSLKQKQKELTEQWDREKTFMTRIRSIKEEIDRVNLEMEAAEREFDLNRAAELKYGTLISLHRQLEEAEKNLQDFRKSGISLLREEVTDLDIAEIVSKWTGIPLSNLQQSERDKLVLLEQVLHQRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVMIMTSNIGSHYILDTLSNTKDSKDAVYELMKKQVVGLARQTFRPEFMNRIDEYIVFQPLDATQICKIVEIQIQRLRDRLKQKNINLHYTKEALELLGTLGFDPNYGARPVKRIIQQLVENEIAMQVLRGDFQEDDSIIVDVDTSPSAKDLPPQKRLRIKKIDNNSISEAMVAND 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100812118 100818225 + Tan0017079.2 Tan01g3577 741001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3577 897 Coils Coil 512 539 - -
Tan01g3577 897 CDD RecA-like_ClpB_Hsp104-like 568 779 - -
Tan01g3577 897 Pfam AAA lid domain 348 450 IPR041546 -
Tan01g3577 897 Gene3D - 559 780 IPR027417 -
Tan01g3577 897 Gene3D - 7 154 IPR036628 -
Tan01g3577 897 Coils Coil 440 467 - -
Tan01g3577 897 Gene3D - 782 878 - -
Tan01g3577 897 FunFam ATP-dependent chaperone ClpB 782 871 - -
Tan01g3577 897 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 685 703 IPR001270 GO:0005524(InterPro)
Tan01g3577 897 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 656 674 IPR001270 GO:0005524(InterPro)
Tan01g3577 897 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 718 732 IPR001270 GO:0005524(InterPro)
Tan01g3577 897 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 611 629 IPR001270 GO:0005524(InterPro)
Tan01g3577 897 Coils Coil 418 438 - -
Tan01g3577 897 Pfam Clp amino terminal domain, pathogenicity island component 100 151 IPR004176 -
Tan01g3577 897 Pfam Clp amino terminal domain, pathogenicity island component 26 74 IPR004176 -
Tan01g3577 897 SMART ClpB_D2_small_2 782 875 IPR019489 -
Tan01g3577 897 SUPERFAMILY Double Clp-N motif 11 162 IPR036628 -
Tan01g3577 897 Gene3D - 155 348 IPR027417 -
Tan01g3577 897 CDD AAA 187 347 - -
Tan01g3577 897 NCBIfam ATP-dependent chaperone ClpB 12 866 IPR017730 GO:0005737(InterPro)|GO:0009408(InterPro)|GO:0042026(InterPro)
Tan01g3577 897 FunFam ATP-dependent Clp protease subunit 560 780 - -
Tan01g3577 897 Pfam C-terminal, D2-small domain, of ClpB protein 782 862 IPR019489 -
Tan01g3577 897 Gene3D - 349 554 IPR027417 -
Tan01g3577 897 Pfam ATPase family associated with various cellular activities (AAA) 210 341 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan01g3577 897 ProSiteProfiles Clp repeat (R) domain profile. 7 152 IPR004176 -
Tan01g3577 897 PANTHER ATP-DEPENDENT CLP PROTEASE 11 874 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Tan01g3577 897 FunFam Chaperone clpB 1, putative 155 348 - -
Tan01g3577 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 864 IPR027417 -
Tan01g3577 897 Coils Coil 478 498 - -
Tan01g3577 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 555 IPR027417 -
Tan01g3577 897 Coils Coil 788 808 - -
Tan01g3577 897 ProSitePatterns Chaperonins clpA/B signature 2. 641 659 IPR028299 -
Tan01g3577 897 Pfam AAA domain (Cdc48 subfamily) 606 775 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan01g3577 897 FunFam ATP-dependent chaperone ClpB 349 554 - -
Tan01g3577 897 ProSitePatterns Chaperonins clpA/B signature 1. 300 312 IPR018368 GO:0005524(InterPro)
Tan01g3577 897 SMART AAA_5 204 348 IPR003593 GO:0016887(InterPro)
Tan01g3577 897 SMART AAA_5 607 762 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3577 K03695 - - csv:101214262 1655.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3574 Tan-Chr1:100789801 Tan01g3577 Tan-Chr1:100812118 1.40E-14 dispersed
Tan01g3575 Tan-Chr1:100806674 Tan01g3577 Tan-Chr1:100812118 1.50E-256 dispersed
Tan01g3577 Tan-Chr1:100812118 Tan04g1804 Tan-Chr4:53944082 0.00E+00 dispersed
Tan01g3576 Tan-Chr1:100812118 Tan01g3577 Tan-Chr1:100812118 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00011 . . . . . . . . . . . . . . . Bhi09g02991 Tan01g3577 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007844 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 35