Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3584 ATGACGGTTGAGCCTAGAGTCGATGACCCAAATGACCAATTTCCGGCTGGAATGCGTGTGCTCGCCGTTGACGACGACCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTACCATGTCACTACAACAAATCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTTCCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAAATTGATCCGAAGGACCGGATGAATTCTGGCAATCAGGACAAGGCTGATTCTGAGAATGGTGAAGAGGCAGCAGATCCAAATGGGAAATTTAATAAGAAAAGGAAGGATCAGGACTACAATGAAGATGATGAACAGGACTATAATGGACAAGAGAATGATGACTCGTCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGAATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTCGATAAGCTCACAAGAGAAAATGTAGCTAGCCATCTTCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTAACTGCACTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTGAGCGGAATTGGGAATTTCCATTCCTTGACTGGACCTCCGCAGTTTCCCAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTTTGGGTATGCATGGCCTTTCTTCCCCAGGAACGGTTCAACTGGGTAATTTGAACAACTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGCAGTGGGAATATTTTCCAGGGAATGCCAGAGCCATCAGAACTTGATCAACTACAACACGTTAAGCACGGTACACATGTGGACAATCTCTCTTCTCCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCAAACATGTCTGCCGGTACTTTGAGCAATCCTCTTTTAGGATTAACCAATGATCCTTTGATTTCAGAAGTCCAGCATCATGAAGTGCATGGTGGTAGAAAATTTGGACCTCAATCTTCCATTTCTGTAGTATCTTCAAACTCGGAAAGTTCACGTCCTTCATTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAAAGCTGCCCATTCATCTAGGTTCCACTTGAATACCATTCCATCTGGCAACCTTCCTAATATTGCTACTTCCTACCATAGTCAGTTGAGGGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCTCATGATTCGAGAACCGATTCTCAACGTCAAGCAGCCACGAATAGCAATAGATATGATCAAATAATCACAAAGGTTCCTGTTCAAGATTGGAATGATCATAAGGAGGATGCCTATTACCACACGTCCTTGGCCTGTAGCACATCAAATTCTTTGATACCAGTGAATGGTGCCGCAGAGACATTACCGAAGCATTTGGAAAATCAGAACTCAATCTTCTCAGGAAGCAAGGATTTTAATGTGACTGGTCAAACAAATGTTCTTGATCATGCAATGGTGGAACACGATCAATTCAAAAAATCAGCTATAGAGACAACTCTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAAGCTAGATTTTCTTCAAGCAACTGCGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGGACGTGCATGTGA 2073 42.79 MTVEPRVDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKIDPKDRMNSGNQDKADSENGEEAADPNGKFNKKRKDQDYNEDDEQDYNGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVDKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNTPACLGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFQGMPEPSELDQLQHVKHGTHVDNLSSPFDERTVFPASIGLPNANMSAGTLSNPLLGLTNDPLISEVQHHEVHGGRKFGPQSSISVVSSNSESSRPSLDNVRCTGDNWSKAAHSSRFHLNTIPSGNLPNIATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRTDSQRQAATNSNRYDQIITKVPVQDWNDHKEDAYYHTSLACSTSNSLIPVNGAAETLPKHLENQNSIFSGSKDFNVTGQTNVLDHAMVEHDQFKKSAIETTLMLKQGYLYDHQQKMQARFSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100891063 100895522 - Tan0016345.1 Tan01g3584 741008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3584 690 MobiDBLite consensus disorder prediction 522 541 - -
Tan01g3584 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Tan01g3584 690 Gene3D - 17 154 - -
Tan01g3584 690 MobiDBLite consensus disorder prediction 141 197 - -
Tan01g3584 690 SUPERFAMILY CheY-like 17 142 IPR011006 -
Tan01g3584 690 Gene3D - 194 257 - -
Tan01g3584 690 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Tan01g3584 690 MobiDBLite consensus disorder prediction 431 459 - -
Tan01g3584 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Tan01g3584 690 MobiDBLite consensus disorder prediction 141 179 - -
Tan01g3584 690 FunFam Two-component response regulator 194 257 - -
Tan01g3584 690 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Tan01g3584 690 FunFam Two-component response regulator 18 175 - -
Tan01g3584 690 CDD REC_typeB_ARR-like 20 134 - -
Tan01g3584 690 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Tan01g3584 690 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Tan01g3584 690 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Tan01g3584 690 MobiDBLite consensus disorder prediction 441 459 - -
Tan01g3584 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 368 IPR045279 GO:0009736(InterPro)
Tan01g3584 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3584 Tan-Chr1:100891063 Tan09g1542 Tan-Chr9:67275508 7.70E-134 dispersed
Tan10g1520 Tan-Chr10:23426252 Tan01g3584 Tan-Chr1:100891063 4.70E-11 dispersed
Tan01g3584 Tan-Chr1:100891063 Tan09g1541 Tan-Chr9:67275508 3.10E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26505 PF00072 Response_reg 3.20E-23 CL0304 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3584 K14491 - csv:101215220 1254.58