Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3590 ATGGCTCCGCGATTGCCGTCTTTGTCATCAATGACCAAATATAAAGCCACCCATTTTTGTTCTCTGCTCAGAACTATCAATTTTCAACAAAAAAGTTATGCCATGGCCAGACCTCAAAAGCGATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTTATTGAAGACGAGGATTTGGCTGGGGACATTCGAAACGGCGGAGGATGCAGCGAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGGCCAAAAGCAAGAACGAATTTTCCGTACAATCCGAATGCAATTCATTCGTCGAACTCGAAGATTTTGTCGGCCAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCACGGGAGTTTAAACGAGAAATTCCGACGCCGGCGCCGCCGGTTTATGCCGGTGGGGCGAGTTCGATGGTGGAGGAGATTAGACCGGCGACGGCGGCGGAGCAAGCGCCATGTGCGGCGGATTGGATGGTGAGAAGCGTGAAAATGGAAAGTGAATTTGAAGAGCTGAAATTGTTGGAAGATGATCACATTGAACAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 648 46.76 MAPRLPSLSSMTKYKATHFCSLLRTINFQQKSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIHSSNSKILSANLTAKLHRCYMASLQISNQASREFKREIPTPAPPVYAGGASSMVEEIRPATAAEQAPCAADWMVRSVKMESEFEELKLLEDDHIEQMIEELLYYGSMEFCL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 100944558 100945344 - Tan0009070.1 Tan01g3590 741014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3590 215 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Tan01g3590 215 SMART rav1_2 41 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3590 215 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 156 IPR050913 -
Tan01g3590 215 SUPERFAMILY DNA-binding domain 41 100 IPR016177 GO:0003677(InterPro)
Tan01g3590 215 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3590 215 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3590 215 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3590 215 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3590 215 Pfam AP2 domain 41 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3590 215 CDD AP2 40 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3590 Tan-Chr1:100944558 Tan02g2752 Tan-Chr2:95774936 5.30E-57 dispersed
Tan01g3590 Tan-Chr1:100944558 Tan02g2751 Tan-Chr2:95766580 6.70E-52 wgd
Tan01g3590 Tan-Chr1:100944558 Tan04g2523 Tan-Chr4:84285541 4.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26507 PF00847 AP2 8.70E-12 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3590 - - - 0.0