Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3590 | ATGGCTCCGCGATTGCCGTCTTTGTCATCAATGACCAAATATAAAGCCACCCATTTTTGTTCTCTGCTCAGAACTATCAATTTTCAACAAAAAAGTTATGCCATGGCCAGACCTCAAAAGCGATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTTATTGAAGACGAGGATTTGGCTGGGGACATTCGAAACGGCGGAGGATGCAGCGAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGGCCAAAAGCAAGAACGAATTTTCCGTACAATCCGAATGCAATTCATTCGTCGAACTCGAAGATTTTGTCGGCCAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCACGGGAGTTTAAACGAGAAATTCCGACGCCGGCGCCGCCGGTTTATGCCGGTGGGGCGAGTTCGATGGTGGAGGAGATTAGACCGGCGACGGCGGCGGAGCAAGCGCCATGTGCGGCGGATTGGATGGTGAGAAGCGTGAAAATGGAAAGTGAATTTGAAGAGCTGAAATTGTTGGAAGATGATCACATTGAACAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA | 648 | 46.76 | MAPRLPSLSSMTKYKATHFCSLLRTINFQQKSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIHSSNSKILSANLTAKLHRCYMASLQISNQASREFKREIPTPAPPVYAGGASSMVEEIRPATAAEQAPCAADWMVRSVKMESEFEELKLLEDDHIEQMIEELLYYGSMEFCL | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 100944558 | 100945344 | - | Tan0009070.1 | Tan01g3590 | 741014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3590 | 215 | FunFam | Ethylene-responsive transcription factor 2 | 40 | 99 | - | - | |
Tan01g3590 | 215 | SMART | rav1_2 | 41 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3590 | 215 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 36 | 156 | IPR050913 | - | |
Tan01g3590 | 215 | SUPERFAMILY | DNA-binding domain | 41 | 100 | IPR016177 | GO:0003677(InterPro) | |
Tan01g3590 | 215 | Gene3D | AP2/ERF domain | 40 | 99 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3590 | 215 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3590 | 215 | PRINTS | Ethylene responsive element binding protein signature | 64 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3590 | 215 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3590 | 215 | Pfam | AP2 domain | 41 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g3590 | 215 | CDD | AP2 | 40 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3590 | Tan-Chr1:100944558 | Tan02g2752 | Tan-Chr2:95774936 | 5.30E-57 | dispersed | |
Tan01g3590 | Tan-Chr1:100944558 | Tan02g2751 | Tan-Chr2:95766580 | 6.70E-52 | wgd | |
Tan01g3590 | Tan-Chr1:100944558 | Tan04g2523 | Tan-Chr4:84285541 | 4.10E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26507 | PF00847 | AP2 | 8.70E-12 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3590 | - | - | - | 0.0 |