Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3599 | ATGGCGTATCACAATCACAATCACCTCTCTCAGGACCTTCCTCTCCACTTTTCCGACCAACAACAGCAGCAGAATCAACCTCTTTCTGATAGCTCTTTGCGTACCATTCTGCCGGACCAGCTCGCCGGCGGCCACTCCTCACCGGACCCCAAATCCCACCACCATCACCATCCGCTGCAGACGGCGCCGAATTGGCTCAACAACGCACTGCTCCGTACCCAAAACCCCCATTCTCACTACTCTACCGACACCGCCACCACCGCCGCGGCCGCGGCCAATACTAATTTCCTCAACCTTCACACCACTGCATCCGATTCCACCGTCTCTCACTCGTCTAACCAATGGCTCTCCCGTCCGATTCTCCACCGCAACCACAGCGATGTAATCGATGACGTCGCCGCTGCTGCCGGCGACGTTATGATCGGTGCCGCCACCGCCGCGCTCTCTCACGATTCCGGCGACCTGAAGAACGACGCCAATACCGGCGACGGATTGAACAAGAGCGAGGGCATGGTGATGGAACATGGCGGCGGCGGCGGTGGAGAGGGGGTTTTGAATTGGCAACATGCTCGTTACAAAGCGGAGATTCTCGCTCATCCTCTTTATGAACAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGCATCGCTACGCCCGTCGACCAATTGCCGAGGATAGACGCTCAGCTCGCTCAGTCTCAGAATGTCGTCGCTAAGTACTCGGCCTTGGGCCACACCGCACCGCCCATGGTTGGTGATGACAAAGAGCTCGATCAGTTCATGACGCATTATGTTCTTCTTCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCCATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCCGGTGAAGGTACGGGAGCGACAATGTCGGACGACGACGACGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAACATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGATACCACCTCGGTCCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTCCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA | 1404 | 51.85 | MAYHNHNHLSQDLPLHFSDQQQQQNQPLSDSSLRTILPDQLAGGHSSPDPKSHHHHHPLQTAPNWLNNALLRTQNPHSHYSTDTATTAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAGDVMIGAATAALSHDSGDLKNDANTGDGLNKSEGMVMEHGGGGGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 101022852 | 101028003 | + | Tan0011286.1 | Tan01g3599 | 741023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3599 | 467 | Gene3D | - | 379 | 440 | - | - | |
Tan01g3599 | 467 | MobiDBLite | consensus disorder prediction | 38 | 61 | - | - | |
Tan01g3599 | 467 | MobiDBLite | consensus disorder prediction | 435 | 467 | - | - | |
Tan01g3599 | 467 | CDD | homeodomain | 381 | 442 | IPR001356 | GO:0003677(InterPro) | |
Tan01g3599 | 467 | ProSiteProfiles | ELK domain profile. | 358 | 378 | IPR005539 | GO:0003677(InterPro) | |
Tan01g3599 | 467 | Pfam | Homeobox KN domain | 398 | 437 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Tan01g3599 | 467 | MobiDBLite | consensus disorder prediction | 453 | 467 | - | - | |
Tan01g3599 | 467 | SMART | ELK_2 | 358 | 379 | IPR005539 | GO:0003677(InterPro) | |
Tan01g3599 | 467 | MobiDBLite | consensus disorder prediction | 300 | 319 | - | - | |
Tan01g3599 | 467 | SMART | KNOX2_2 | 246 | 301 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan01g3599 | 467 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 143 | 449 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan01g3599 | 467 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 379 | 440 | - | - | |
Tan01g3599 | 467 | SMART | HOX_1 | 380 | 445 | IPR001356 | GO:0003677(InterPro) | |
Tan01g3599 | 467 | Pfam | ELK domain | 358 | 379 | IPR005539 | GO:0003677(InterPro) | |
Tan01g3599 | 467 | ProSiteProfiles | 'Homeobox' domain profile. | 378 | 441 | IPR001356 | GO:0003677(InterPro) | |
Tan01g3599 | 467 | SMART | KNOX1_2 | 190 | 234 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan01g3599 | 467 | Pfam | KNOX2 domain | 250 | 300 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan01g3599 | 467 | Pfam | KNOX1 domain | 192 | 233 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Tan01g3599 | 467 | SUPERFAMILY | Homeodomain-like | 380 | 444 | IPR009057 | - | |
Tan01g3599 | 467 | MobiDBLite | consensus disorder prediction | 435 | 452 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3599 | Tan-Chr1:101022852 | Tan01g3601 | Tan-Chr1:101022852 | 1.30E-262 | dispersed | |
Tan01g3599 | Tan-Chr1:101022852 | Tan01g3600 | Tan-Chr1:101022852 | 4.40E-258 | tandem | |
Tan01g3599 | Tan-Chr1:101022852 | Tan02g2744 | Tan-Chr2:95684812 | 8.80E-190 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26508 | PF03791 | KNOX2 | 1.90E-21 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3599 | - | - | - | 0.0 |