Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3600 ATGGCGTATCACAATCACAATCACCTCTCTCAGGACCTTCCTCTCCACTTTTCCGACCAACAACAGCAGCAGAATCAACCTCTTTCTGATAGCTCTTTGCGTACCATTCTGCCGGACCAGCTCGCCGGCGGCCACTCCTCACCGGACCCCAAATCCCACCACCATCACCATCCGCTGCAGACGGCGCCGAATTGGCTCAACAACGCACTGCTCCGTACCCAAAACCCCCATTCTCACTACTCTACCGACACCGCCACCACCGCCGCGGCCGCGGCCAATACTAATTTCCTCAACCTTCACACCACTGCATCCGATTCCACCGTCTCTCACTCGTCTAACCAATGGCTCTCCCGTCCGATTCTCCACCGCAACCACAGCGATGTAATCGATGACGTCGCCGCTGCTGCCGGCGACGTTATGATCGGTGCCGCCACCGCCGCGCTCTCTCACGATTCCGGCGACCTGAAGAACGACGCCAATACCGGCGACGGATTGAACAAGAGCGAGGGCATGGTGATGGAACATGGCGGCGGCGGCGGTGGAGAGGGGGTTTTGAATTGGCAACATGCTCGTTACAAAGCGGAGATTCTCGCTCATCCTCTTTATGAACAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGCATCGCTACGCCCGTCGACCAATTGCCGAGGATAGACGCTCAGCTCGCTCAGTCTCAGAATGTCGTCGCTAAGTACTCGGCCTTGGGCCACACCGCACCGCCCATGGTTGGTGATGACAAAGAGCTCGATCAGTTCATGACGCATTATGTTCTTCTTCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCCATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCCGGTGAAGGTACGGGAGCGACAATGTCGGACGACGACGACGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAACATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGATACCACCTCGGTCCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTCCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGGTGA 1368 52.12 MAYHNHNHLSQDLPLHFSDQQQQQNQPLSDSSLRTILPDQLAGGHSSPDPKSHHHHHPLQTAPNWLNNALLRTQNPHSHYSTDTATTAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAGDVMIGAATAALSHDSGDLKNDANTGDGLNKSEGMVMEHGGGGGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKR 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 101022852 101028003 + Tan0011286.2 Tan01g3600 741024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3600 455 FunFam homeobox protein knotted-1-like 3 isoform X1 379 440 - -
Tan01g3600 455 MobiDBLite consensus disorder prediction 38 61 - -
Tan01g3600 455 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g3600 455 CDD homeodomain 381 442 IPR001356 GO:0003677(InterPro)
Tan01g3600 455 ProSiteProfiles ELK domain profile. 358 378 IPR005539 GO:0003677(InterPro)
Tan01g3600 455 MobiDBLite consensus disorder prediction 435 455 - -
Tan01g3600 455 SMART ELK_2 358 379 IPR005539 GO:0003677(InterPro)
Tan01g3600 455 MobiDBLite consensus disorder prediction 300 319 - -
Tan01g3600 455 SMART KNOX2_2 246 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g3600 455 SUPERFAMILY Homeodomain-like 380 444 IPR009057 -
Tan01g3600 455 Pfam KNOX1 domain 192 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g3600 455 SMART HOX_1 380 445 IPR001356 GO:0003677(InterPro)
Tan01g3600 455 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677(InterPro)
Tan01g3600 455 Pfam ELK domain 358 379 IPR005539 GO:0003677(InterPro)
Tan01g3600 455 SMART KNOX1_2 190 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g3600 455 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 141 440 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g3600 455 Gene3D - 379 440 - -
Tan01g3600 455 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3600 Tan-Chr1:101022852 Tan02g2745 Tan-Chr2:95684812 1.90E-189 dispersed
Tan01g3599 Tan-Chr1:101022852 Tan01g3600 Tan-Chr1:101022852 4.40E-258 tandem
Tan01g3600 Tan-Chr1:101022852 Tan01g3601 Tan-Chr1:101022852 4.30E-258 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26509 PF03791 KNOX2 1.90E-21 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3600 - - - 0.0