Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3651 ATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTAGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTTCCTGCATCAAAAGACCAATCTGAGGAAGCCAGTCATGGCCGTGGAGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGCCTCGACAGCGACAACGCCCACATCGGCGTCTGGCAGAAGCGCGCAGGCACTCGAGCTGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAAACACCATTGCTGTCGCTGTCACCATCACCGTCACCGTCGCCCGAATTGGCGAGCCAAGAAGCTGATGGCCACCGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTGCCCACTTCCTTCAACTTCAAGCTAA 591 52.96 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGRGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASNWVMRIELGKKETPLLSLSPSPSPSPELASQEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSTSS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 101400068 101402167 + Tan0001953.1 Tan01g3651 741075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3651 196 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Tan01g3651 196 MobiDBLite consensus disorder prediction 59 83 - -
Tan01g3651 196 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g3651 196 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Tan01g3651 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 132 IPR050913 -
Tan01g3651 196 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3651 Tan-Chr1:101400068 Tan02g2752 Tan-Chr2:95774936 3.40E-26 dispersed
Tan01g3651 Tan-Chr1:101400068 Tan01g3652 Tan-Chr1:101400068 1.10E-74 tandem
Tan01g3651 Tan-Chr1:101400068 Tan04g2588 Tan-Chr4:85134294 4.40E-50 wgd
Tan01g3651 Tan-Chr1:101400068 Tan08g0245 Tan-Chr8:2147093 4.10E-56 wgd
Tan01g3651 Tan-Chr1:101400068 Tan09g1407 Tan-Chr9:66205355 1.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26513 PF00847 AP2 4.00E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3651 - - - 0.0