Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3670 ATGTCGTCGTCGAAGCAGAAGCCGAAGAAGATGGGATTATTAGGGAGATCGATGTGCTGGAGAGAGCAGCAGCAAGAGATCGAGCAATTATCCAGAGACGACGGCAGCCAATACAGTCTCACCGGCGGGATCCTGCCGCCGCTCGGCATCAATGGCCGAAATAATCGCAGAGCCAAACTTCGTCCTCATATAATCTCGCCGTTTGATTACCATTACAGAGTTTGGGAGACGTTTCTGATATTTCTAGTACTCTACACGGCCTGGGTTTGTCCGTTTGAGTTCGGGTTTCTGGAATCGCCAACCGGAGCTCTTGCTGTAATTGATAATGTTGTTAATGGAATATTCGCCATTGATATAGTTTTGACGTTCTTCCTCGCATATTTGGACAAATCTACGTACCTGCTCGTGGATGAACCTAAGCTGATTGCTCTGCGATATGCCAAAACGTGGTTGATTCTTGACGTTGTGTCCATTATTCCGTCGGAATTGGCTCGCAGTATTCTTCCTCCTCCACTTCAGACTTATGGCTACTTCAATATGCTTCGTCTATGGCGTCTTCGCCGAGTCAGTTCCATGTTCGCCAGGTTGGAAAAGGACAAGAATTTCAACTATTTCTGGGTTCGGTCCGCAAAGCTTATATTTGTGTGTCTGTTTTCAGTTCATTTTGCTGGGTGCTGCTTCTATCTAATTGCTTCAAACTATAGAGACCCTAAAAAGACATGGTTGGCCTTATCCACGGACGACATTAAGAATGAGACTCTGTGGCAACATTATGCGACTTCCATTTACTGGTCAATTGTCACACTCACGACCACTGGCTATGGAGATTTGCATCCTGTAAATGAACAAGAAATGACATTTCTCATCTGTTACCTCTTTTTTATTCTGGGGTTGCAAGCTTACTTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCAGTCGAACCAGGAAATTTAGGGACACCATACAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTACCTGTTCGGCTGCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGGACTGATTCAGAGGGATTACAACAGCAAGAAACAGTCGATTCCCTTCCAAAAGCCATTAGATCTAGCATCGCTCACCATCTCTTCTATTCACTTGTTGACAGTGCTTATTTGTTTGATGGGGTGTCAACTGACTTGATTTTTCAACTGGTAACAGAAATGAAGGCCGAGTACTTCCCTCCCAAAGAAGACATCATCTTACAGAATGAAGCACCAACAGAATTCTATATAGTTGTCACTGGCACTGCGGATCTTTTTGTACGAAGAAATGGAGTAGAAGAGATCATCGGCGAAGCGAGGACAGGAGATGTCATTGGCGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACCGTTCGAACCAGCCGTTTGTGTCAATTGTTGCGTATGAATCGCTCTTCATTTTTCAACTTGGTACAAGCAAGCATTGGGGATGGGACAATCATAATGAACAATCTCCTTAAGCACCTGGAGGAGATAAAAGACCCCATGATGAAGGAAATTCTGCACGAAACAGAAAAAACATTGACTCAAGCTCGAATGGACATGCCTCTCAATTTACACGACGCAGCTGACAATGACGATGACTTATTGTTGCATAAGTTGCTGAAGCGAGGTTCACATCCAAATGAAGTAGAAGACCGTAGCGGGAAGACAGCACTTCATGTTGCAGCAGCTAAAGGGAACGAACACTGCATAGTTCGACTCATTCAGTATGGAGCAGATCCCAACCGAAGAGACTTTGAAGGAAACGTTCCCCTATGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTTAAGCTTCTAATGGACAACGGCGCCAATATTTCTTCAGGCGACGTTGCCCATTTTGCGTGCACGGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCCTCGTCCAATGCGGTGGAGACGTGACGCTGCCAAAAAACAATGGGACCACGGCTCTCCACATGGCAGTATGTGAAGGAAACAGTGAAGTGGTTAAGTTCCTTTTAGAGCAAGGGGCTGACATTGATAAGCCAGATGTTTATGGATGGACTCCTCGAGCATTGGCTGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGTTAAGCAAGCTGTGAATAAATCATCTGTTGTCCATATTCCACAAAATCCCAAATCAAATTACCCACGGAAGTACCAGAGTGAGTCGAACATGCCACGGTTTTCCCAAGACTCCTGCACGACTCATGTTCGACACACAAAAATTTCTGATATGCATCCTATAAGGAGAAGAAGCAATAATCACCAAAACTCACTAGTAGGGTTCATGACAGCTGCCAATAACGGTGAAAGGGATGTTCTACAATCTTCATCACTCGGTTTTGGTTTTAGCAATAACCGGAGTGCGAGAGTGGCTTACCAGGCAAGAATTATTCTCAGTTGCCCTGAAAAGGAGGAGGCAGCTGCAAAGCTTGTACTTTTACCCAAATCCATCAAAGAACTACTTGAAATTGGTTCCCAAAAATTTGGGATTTCTGTAACAAAGATATTAACTCAAGAAGGAGCTGAAGTTGAGGATATAGACCTTATTAGAGACGGAGATCACCTCCTCCTTGTTGGTGATGCTTAG 2667 44.17 MSSSKQKPKKMGLLGRSMCWREQQQEIEQLSRDDGSQYSLTGGILPPLGINGRNNRRAKLRPHIISPFDYHYRVWETFLIFLVLYTAWVCPFEFGFLESPTGALAVIDNVVNGIFAIDIVLTFFLAYLDKSTYLLVDEPKLIALRYAKTWLILDVVSIIPSELARSILPPPLQTYGYFNMLRLWRLRRVSSMFARLEKDKNFNYFWVRSAKLIFVCLFSVHFAGCCFYLIASNYRDPKKTWLALSTDDIKNETLWQHYATSIYWSIVTLTTTGYGDLHPVNEQEMTFLICYLFFILGLQAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSSIAHHLFYSLVDSAYLFDGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTEFYIVVTGTADLFVRRNGVEEIIGEARTGDVIGEIGVLCYQPQLFTVRTSRLCQLLRMNRSSFFNLVQASIGDGTIIMNNLLKHLEEIKDPMMKEILHETEKTLTQARMDMPLNLHDAADNDDDLLLHKLLKRGSHPNEVEDRSGKTALHVAAAKGNEHCIVRLIQYGADPNRRDFEGNVPLWQAIQGKHESIVKLLMDNGANISSGDVAHFACTAAEQNSIDMLKSLVQCGGDVTLPKNNGTTALHMAVCEGNSEVVKFLLEQGADIDKPDVYGWTPRALADHQGHEEIKELFSVKQAVNKSSVVHIPQNPKSNYPRKYQSESNMPRFSQDSCTTHVRHTKISDMHPIRRRSNNHQNSLVGFMTAANNGERDVLQSSSLGFGFSNNRSARVAYQARIILSCPEKEEAAAKLVLLPKSIKELLEIGSQKFGISVTKILTQEGAEVEDIDLIRDGDHLLLVGDA 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 101564582 101571281 + Tan0000602.1 Tan01g3670 741094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3670 888 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 SUPERFAMILY Ankyrin repeat 524 719 IPR036770 -
Tan01g3670 888 ProSiteProfiles Ankyrin repeat region circular profile. 666 697 - -
Tan01g3670 888 Pfam Cyclic nucleotide-binding domain 409 494 IPR000595 -
Tan01g3670 888 Gene3D Jelly Rolls 354 514 IPR014710 -
Tan01g3670 888 SMART cnmp_10 390 507 IPR000595 -
Tan01g3670 888 SMART ANK_2a 666 695 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 SMART ANK_2a 602 631 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 SMART ANK_2a 535 564 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 SMART ANK_2a 633 662 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 SMART ANK_2a 569 598 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 PRINTS Ankyrin repeat signature 682 696 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 PRINTS Ankyrin repeat signature 570 585 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 FunFam Potassium channel KAT3 74 312 - -
Tan01g3670 888 Pfam KHA, dimerisation domain of potassium ion channel 822 884 IPR021789 -
Tan01g3670 888 Pfam Ankyrin repeats (3 copies) 540 631 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 Pfam Ankyrin repeats (3 copies) 640 718 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 PRINTS EAG/ELK/ERG potassium channel family signature 108 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3670 888 PRINTS EAG/ELK/ERG potassium channel family signature 258 275 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3670 888 PRINTS EAG/ELK/ERG potassium channel family signature 85 92 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3670 888 PRINTS EAG/ELK/ERG potassium channel family signature 119 128 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3670 888 PRINTS EAG/ELK/ERG potassium channel family signature 302 311 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3670 888 ProSiteProfiles cAMP/cGMP binding motif profile. 390 492 IPR000595 -
Tan01g3670 888 Pfam Ion transport protein 72 317 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g3670 888 FunFam Potassium channel KAT2 378 514 - -
Tan01g3670 888 SUPERFAMILY Voltage-gated potassium channels 67 311 - -
Tan01g3670 888 Gene3D - 72 311 - -
Tan01g3670 888 ProSiteProfiles KHA domain profile. 822 888 IPR021789 -
Tan01g3670 888 Gene3D - 537 721 IPR036770 -
Tan01g3670 888 ProSiteProfiles Ankyrin repeat region circular profile. 569 600 - -
Tan01g3670 888 ProSiteProfiles Ankyrin repeat region circular profile. 602 633 - -
Tan01g3670 888 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 PANTHER POTASSIUM CHANNEL AKT1 27 883 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Tan01g3670 888 MobiDBLite consensus disorder prediction 732 760 - -
Tan01g3670 888 CDD CAP_ED 390 493 IPR000595 -
Tan01g3670 888 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515(InterPro)
Tan01g3670 888 SUPERFAMILY cAMP-binding domain-like 315 510 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3670 Tan-Chr1:101564582 Tan05g2590 Tan-Chr5:77227450 4.90E-08 dispersed
Tan01g3670 Tan-Chr1:101564582 Tan09g1393 Tan-Chr9:66065097 8.60E-279 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3670 K21867 - csv:101217334 1356.66