Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3673 ATGTCCGGCTCGAACATGGCGGAAGATCTACGCTCTTGGTCCCACGCGCTCGTCAGAATCTCTCCCTACACCTTCTCCGCCGTCGGCATTGCCATAGCCATCGGCGTCTCCGTCCTCGGAGCCGCCTGGGGGATTTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATCTAATTAGTGTGATTTTCTGTGAAGCCGTGGCCATATATGGTGTCATTGTGGCCATCATCCTACAAACAAAACTGGAGAGTGTTCCAGCATCTAAAATCTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCCTCTGGGATTATTGTGGGCTTTGCCAACCTGGTTTGCGGGCTATGTGTAGGGATTATTGGAAGCAGTTGTGCATTGTCTGATGCCCAAAACTCATCCCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGGTTATTTGGTGTAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAA 549 47.91 MSGSNMAEDLRSWSHALVRISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASKIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 101590923 101593097 - Tan0019082.1 Tan01g3673 741097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3673 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Tan01g3673 182 Gene3D - 23 178 IPR035921 -
Tan01g3673 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 12 175 - GO:0016021(PANTHER)
Tan01g3673 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Tan01g3673 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Tan01g3673 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Tan01g3673 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Tan01g3673 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Tan01g3673 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Tan01g3673 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan01g3673 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan01g3673 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan01g3673 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3673 Tan-Chr1:101590923 Tan01g3674 Tan-Chr1:101590923 2.70E-62 tandem
Tan01g3673 Tan-Chr1:101590923 Tan02g2689 Tan-Chr2:95206854 1.60E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3673 K03661 - rcu:8284846 318.546