Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3680 ATGAGTAGGGAAAACGCTACTTTTCAAGTTGAAGAATGCTCTGGCAGAATCACGAGGGCACGGGCAAAAGAGCTAAGCGAATCAGGAGGCATTCTGTGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCTATTCTACGAGCTAACTCTAAAAGAATGGCACCTGATGATATTAAGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGACGTGACTAACATTTCCACCACAGGTTCTGATAAGAACTGCGGCAATGCTTCTAATACCCAGGGGGCCAAACCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGTGTCTTTAAGTGTTCCTGTAGAAATTCTAGGAGCTGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAGGTCTCCTTACGAGAAAATTTAGACGAAAAAGAGAGAACAATGCAAACTATGTGTCAGACCAGCAGAGAATGTGGAGTTTCGGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATGGCACCTGAACAATCGGCAGCATCAAATGATAGAGGCATTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACGGAGCTTGATCAAAGGGCATCAACCGACTATATGGAACAGTTGCAGAATGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGATTTCTGAAGAATATAAGCTGGTTCCAGATACACTCTATCTCACTGTGAACGTTATTGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGTCTACAACTTCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATATGAGGAGATTTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGCGTAAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTACGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGATTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAAATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCATTATACAAGTTACAACGCTTCTGAACTGAAAATTGCAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGGTTCCTCGTTAAATGCCATACGTGAGAAGTATAAACAACCGAAGTTTAAATGCGTAGCGAAATTAACATCCACTCGATCGGTTCTATCACTATTCTGA 1455 40.76 MSRENATFQVEECSGRITRARAKELSESGGILCSSKSSGVQKPILRANSKRMAPDDIKICSISSNGLPNKRRAVLKDVTNISTTGSDKNCGNASNTQGAKPTRRVSAKAKANVSLSVPVEILGAEEDANTRLAEDLSKIRVVESREVSLRENLDEKERTMQTMCQTSRECGVSDMILSVSSEESIPQPNEKFMAPEQSAASNDRGIIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTDYMEQLQNDITANMRGILVDWLVEISEEYKLVPDTLYLTVNVIDRFLSQNYIEKKRLQLLGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMERKVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEILANYLAELTLVEYSFLKFLPSLIAASAVFLAKWTLDQSDHPWNPTLEHYTSYNASELKIAVLALQDLQLNTSGSSLNAIREKYKQPKFKCVAKLTSTRSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 101634757 101642547 + Tan0017188.1 Tan01g3680 741104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3680 484 FunFam Cyclin A1 341 473 - -
Tan01g3680 484 Coils Coil 139 159 - -
Tan01g3680 484 Gene3D - 225 473 - -
Tan01g3680 484 MobiDBLite consensus disorder prediction 86 102 - -
Tan01g3680 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Tan01g3680 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Tan01g3680 484 CDD CYCLIN_AtCycA_like_rpt1 217 350 - -
Tan01g3680 484 SUPERFAMILY Cyclin-like 353 476 IPR036915 -
Tan01g3680 484 MobiDBLite consensus disorder prediction 86 105 - -
Tan01g3680 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Tan01g3680 484 SMART cyclin_7 358 446 IPR013763 -
Tan01g3680 484 SMART cyclin_7 261 345 IPR013763 -
Tan01g3680 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Tan01g3680 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Tan01g3680 484 PIRSF Cyclin_A_B_D_E 36 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan01g3680 484 FunFam Mitotic cyclin 6 239 339 - -
Tan01g3680 484 Gene3D - 239 352 - -
Tan01g3680 484 SMART Cyclin_C_2 354 477 IPR004367 -
Tan01g3680 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3680 Tan-Chr1:101634757 Tan01g4722 Tan-Chr1:113082550 3.90E-76 dispersed
Tan01g5103 Tan-Chr1:116409736 Tan01g3680 Tan-Chr1:101634757 4.30E-45 transposed
Tan02g0023 Tan-Chr2:602421 Tan01g3680 Tan-Chr1:101634757 2.80E-34 transposed
Tan03g2169 Tan-Chr3:76288302 Tan01g3680 Tan-Chr1:101634757 1.40E-43 transposed
Tan05g0055 Tan-Chr5:582263 Tan01g3680 Tan-Chr1:101634757 5.50E-47 transposed
Tan06g0344 Tan-Chr6:2682305 Tan01g3680 Tan-Chr1:101634757 4.20E-113 transposed
Tan11g1250 Tan-Chr11:10640351 Tan01g3680 Tan-Chr1:101634757 5.90E-83 transposed
Tan01g3680 Tan-Chr1:101634757 Tan02g2673 Tan-Chr2:95034803 4.20E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3680 K06627 - csv:101204275 831.632