Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3719 ATGCCTCGTAAGGTGAGCCACGGGTTGGATTATGACGAAGATTACGACGAGTACGACGATTATGATTACTACGATAGCGATTTCGACGTAGAAGACAAAGAAAAAACACATGGGGCTAAGGAAGAAACAAAGGGACATAAGCTTTGGCGATGTCCAATTTGCACTTATGACAATGAAGACAGTTTTTCTGCGTGCGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACGACAGCAAAACTCGTCATGACAAAACAGTCGGCCATAAAGACTTCAACTCTTCAGTATTATCTTCAGACATCACTAATGAAGGTGCAAATAATGCAGCATTGACTTCAAAAAGTGCATATGATTCGTCTGCTGTATTGTCAAAGGGCAAAAAAAGTACAGTGGTCATTGAAGACCATAATATGTCAATTAGTGTTACAAAAAATTTACAATCCCGTGATAACAGGCCATCAATCACTTCCACATCAAAGTCAGCTGGAAAATTTGACAGCCTGGATGAGAGCAGTAACCCTCCTGTGGAACGGGAAAAGCCACAGAGTATTGCCGGTAGTCTGAACAACATGGATCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGTTAGGAAAAACATCAAATGTGCAGTATAAACATGATAAATGGATGCTGCCTGATAAAGTTGTAGATACTTTGACTCAGCTGAATCTTGCTATTGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGCATAACCATGACTGTCGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTCGTTGTGCTTGATTCACCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGTGCATCACAAGCCGATGCTGCAGTTCTCGTTATAGATGCATCTGTTGGTGCATTTGAAGCCGGTTTGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATAATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGTCCGCTATGACTTTGTTAAGCAGCAACTTGGAGCATTTTTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCTAATCAAAATCTGGTGAACGCCCCTTCTGATGTTCGATTATTGTCTTGGTATCGTGGACCTAATCTGTTGGAGGCAATTGATTCCCTTCAACCACCCACTAGAGATTTCTCTAAGCCACTGCTTATGCCGATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCATTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAGTCATGCCATCTAGAGATAAAGGTACTGTGCGCACTTTAGAACGTGATTCTCAGGCTTGCAAAATTGCAAGAGCGGGGGACAACGTGACTGTTTGTCTACAAGGAATTGAAGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGACTTTGCAACTCCGATATTAATCGGATCGCAGTTGGAAATTCATATACACCACGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTGTCATTGCTCGATTCGAAGACGGGAAAGGTTACGAAGAAGGCACCACGTTGTCTCAGTGCTAAACAAAGTGCAGTGATTGAGGTTGTTTTGCACAGTCCAGTTTGTGTGGAAGCATTCTCAACCAGTCGAGCTCTCGGGCGAGTATTTCTAAGAGCAATGGGCAGAACTATAGCCGTCGGCATTGTGACCCAACTAATCGGAGATCCCGAATAA 1983 42.76 MPRKVSHGLDYDEDYDEYDDYDYYDSDFDVEDKEKTHGAKEETKGHKLWRCPICTYDNEDSFSACDICGVLRNPLVNDSKTRHDKTVGHKDFNSSVLSSDITNEGANNAALTSKSAYDSSAVLSKGKKSTVVIEDHNMSISVTKNLQSRDNRPSITSTSKSAGKFDSLDESSNPPVEREKPQSIAGSLNNMDLNVKSAYANYISGLGKTSNVQYKHDKWMLPDKVVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGASQADAAVLVIDASVGAFEAGLDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKVRYDFVKQQLGAFFRSCGYKDSSLSWIPLSAMANQNLVNAPSDVRLLSWYRGPNLLEAIDSLQPPTRDFSKPLLMPICDVVRSLSLGQVSAIGKLEAGALQSGSKVLVMPSRDKGTVRTLERDSQACKIARAGDNVTVCLQGIEASSVMAGGVLCHPDFPVAVAKHLELKILTLDFATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLHSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 101991566 101998751 + Tan0019659.1 Tan01g3719 741143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3719 660 PRINTS GTP-binding elongation factor signature 373 382 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 PRINTS GTP-binding elongation factor signature 312 322 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 PRINTS GTP-binding elongation factor signature 328 339 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 PRINTS GTP-binding elongation factor signature 292 300 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 PRINTS GTP-binding elongation factor signature 233 246 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 Gene3D Translation factors 550 657 - -
Tan01g3719 660 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Tan01g3719 660 Gene3D Translation factors 457 546 - -
Tan01g3719 660 CDD EF1_alpha 233 452 - -
Tan01g3719 660 FunFam Elongation factor 1 alpha-like protein 222 453 - -
Tan01g3719 660 Pfam Elongation factor Tu domain 2 478 542 IPR004161 GO:0005525(InterPro)
Tan01g3719 660 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 552 656 IPR009001 -
Tan01g3719 660 Pfam GTP-eEF1A C-terminal domain-like 554 653 IPR054696 -
Tan01g3719 660 PANTHER TRANSLATION FACTOR 230 653 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Tan01g3719 660 SUPERFAMILY Ran binding protein zinc finger-like 45 72 IPR036443 -
Tan01g3719 660 Gene3D - 221 453 IPR027417 -
Tan01g3719 660 CDD HBS1_C_III 547 655 - -
Tan01g3719 660 Pfam Elongation factor Tu GTP binding domain 232 451 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 FunFam Translation elongation factor EF-1 456 546 - -
Tan01g3719 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 463 IPR027417 -
Tan01g3719 660 MobiDBLite consensus disorder prediction 145 168 - -
Tan01g3719 660 SUPERFAMILY Translation proteins 451 546 IPR009000 -
Tan01g3719 660 FunFam elongation factor 1-alpha isoform X4 550 659 - -
Tan01g3719 660 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 229 460 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan01g3719 660 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3719 Tan-Chr1:101991566 Tan05g0274 Tan-Chr5:2073060 2.90E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3719 K14416 - csv:101219939 970.689