Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g3729 | ATGGCGAACCCTATCTCTCTCCAAGAGATTCGAATCGAGTCCGTTGATCTGGAACGTATTTCAATCGACGAAGTGTTCGAGAAGTTAAAATGCTCGAAAGAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCCAACAAACTCGAAGAGATAAAGGAGAGCAAGATTCTGAAATTTCTGGGGTTTATGTGGAATCCTCTCTCGTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTAGCAAACGGCGGTGGAAGGCCTCCAGACTGGCCGGATTGCGTGGGAGTCATGGCCCTACTTTTAATCAACTCAACCATCAGTTTTTTGGAGGAAAACAACGCAGGAAATGCAGCTGCAGCTCTCATGGCCGGTCTTGCCCCCAAAACTAAGGTTCTCAGAGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCTGGAGATATAATAAGTATCAAATTGGGAGATATAATCCCTGCTGATGCTCGTCTTCTTCAGGGGGACCCTTTGAAGATTGATCAATCTGCTTTAACTGGCGAGTCCCTTCCTGTTACCAAAAACCCTTCAGATGAAGTTTTTTCAGGATCAACTTGTAAACAGGGAGAAATTGAAGCAGTTGTGATTGCCACTGGTGTGCACACCTTCTTTGGCAAAGCTGCTCATTTAGTGGACAGCACCAATCAAGTTGGCCATTTCCAAAAAGTTCTTACTGCCATCGGGAACTTCTGTATTTGCTCCATTGCTATTGGAATTGTTATTGAGATCATAGTCATGTACCCAATTCAACATCGTGCATATAGAGATGGCATTGACAATTTGCTGGTGCTTTTGATTGGAGGAATTCCTATTGCCATGCCCACTGTTTTATCTGTCACCATGGCCATTGGTTCCCACCGACTTTCTAAGCAAGGTGCAATTACCAAGCGGATGACTGCCATTGAGGAGATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACTGGAACATTAACCTTGAATAAGCTTACTGTTGACCAATCCTTGACTGAAGTCTTTGTGGGGGATGTCGATAAAGAACATGTCATCCTTCTTGCAGCAAGGGCTTCTAGAACCGAGAATCAGGATGCCATTGATGCTGCTATTGTTGGAATGTTGGCTGATCCAAAAGAGGCACGAGCTGGTATTAGTGAGGTTCATTTTTTTCCGTTCAATCCTGTAGATAAGAGAACGGCTCTGACTTATATTGATTCTAATGATAACTGGCATCGAGTTAGCAAAGGTGCTCCAGACCAGATCTTAAATCTTTGCCATGCAAACCCAGTCGTCCGGAAACAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGTGGCCTCCGATCTCTAGGTGTTGCTAGACAGAAAGTACCTAAGAGAACTAAAGAAAGTCCAGGAGATCCATGGCAACTTGTTGGGTTGTTAGCTTTGTTTGATCCTCCCAGACATGATAGTGCAGAAACTATCAGAAGGGCTCTAAACCTTGGAGTAAATGTCAAGATGATTACTGGGGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGGTATGGGATCAAATATGTACCCTTCTTCTGCATTACTACAAAACACTGGTGCGTCACTTCCCGTGGATGAGTTGATTGAAACAGCGGATGGATTTGCTGGTGTATTTCCAGAACACAAATATGAAATTGCGAGAAGGTTACAAGAGAAGAAACACATATGTGGAATGACCGGAGATGGTGTAAATGATGCGCCTGCACTAAAGAAGGCAGATATTGGAATTGCGGTTGCTGATGCAACTGATGCAGCTCAAAACGCTTCTGATATCGTCCTCACTGAACCAGGATTAAGCGTTATTATCAGTGCAGTTTTGACTAGCAGGGCTATTTTTCAGAGGATGAAGAACTATACAATTTATGCAGTTTCCATCACCATTCGTATAGTGTTTGGTTTTATGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATTATAGCTATTCTAAACGATGGAACCATCATGACGATTTCCAAGGATCGAGTTAAGCCTTCTCCACAGCCTGATAGCTGGAAGTTGAAGGAAATTTTCGCTACTGGCATTGTGTTAGGAGGATACTTGGCATTGATGACCGTGTTATTCTTTTGGATCGTGAGAGACACCGACTTTTTCTCGAACAAGTTTCATGTAGAATCCCTGATGAACAACGACCTGAAAATGATGTCAGCATTGTATCTACAAGTTAGCATCGTGAGTCAAGCCCTTATTTTTGTCACAAGATCTCAAAGTTGGTCATTCGTGGAACGTCCTGGACTTCTCTTAGTGAGCGCTTTCATAGCTGCCCAGCTGGTAGCAACTATGATAGCAGTTTATCTAAACTTGGCTTTTGCAAGGATAAAAGGCATTGGTTGGAGATGGGCTGGTGTTATTTGGCTATATAGTTTTATAACTTACCTCCCTCTTGATATTCTCAAATTTACCATTCGCTATGCTCTCAGTGGAAGGGCCTGGAACAACCTTTTGCAGAATAAGACTGCATTCACAACAAAGAAAGATTATGGGAAGGAAGAGAGAGAAGCACAATGGGCTACCGCACAAAGGACTATCCATGGTCTTCAACCACCTCAAACCAACAATTCTCTTTTTGATAGGAACAATTGTGGAGAGCTTTCTGAGATCGCCGAGCAAGCGAGGCGACGGGCTGAAATTGCAAGGCTCCGTGAGTTGCACACTCTAAAAGGCCGGGTAGAGTCTGTAGTAAAGTTGAAAGGACTCGACATCGATACATTTAATCAACATTACACGGTTTAA | 2847 | 43.66 | MANPISLQEIRIESVDLERISIDEVFEKLKCSKEGLSSEEGANRLQVFGPNKLEEIKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRPPDWPDCVGVMALLLINSTISFLEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGIVIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQSLTEVFVGDVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGISEVHFFPFNPVDKRTALTYIDSNDNWHRVSKGAPDQILNLCHANPVVRKQVHGVIDKFAECGLRSLGVARQKVPKRTKESPGDPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLQNTGASLPVDELIETADGFAGVFPEHKYEIARRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAAQNASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWIVRDTDFFSNKFHVESLMNNDLKMMSALYLQVSIVSQALIFVTRSQSWSFVERPGLLLVSAFIAAQLVATMIAVYLNLAFARIKGIGWRWAGVIWLYSFITYLPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATAQRTIHGLQPPQTNNSLFDRNNCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTFNQHYTV | 948 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 102044889 | 102049785 | + | Tan0016935.1 | Tan01g3729 | 741153 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g3729 | 948 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
| Tan01g3729 | 948 | Gene3D | - | 133 | 217 | - | - | |
| Tan01g3729 | 948 | FunFam | Plasma membrane ATPase | 481 | 633 | - | - | |
| Tan01g3729 | 948 | Pfam | haloacid dehalogenase-like hydrolase | 326 | 599 | - | - | |
| Tan01g3729 | 948 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 332 | 338 | IPR018303 | - | |
| Tan01g3729 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 616 | 641 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 757 | 778 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 557 | 573 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 446 | 464 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 585 | 601 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 82 | IPR004014 | - | |
| Tan01g3729 | 948 | NCBIfam | HAD-IC family P-type ATPase | 103 | 349 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | NCBIfam | HAD-IC family P-type ATPase | 560 | 675 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Tan01g3729 | 948 | SUPERFAMILY | HAD-like | 326 | 632 | IPR036412 | - | |
| Tan01g3729 | 948 | FunFam | Plasma membrane ATPase | 133 | 217 | - | - | |
| Tan01g3729 | 948 | Pfam | E1-E2 ATPase | 132 | 310 | - | - | |
| Tan01g3729 | 948 | SFLD | C1.7: P-type atpase like | 312 | 636 | - | - | |
| Tan01g3729 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 608 | 620 | - | - | |
| Tan01g3729 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
| Tan01g3729 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 180 | 194 | - | - | |
| Tan01g3729 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 484 | 495 | - | - | |
| Tan01g3729 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 506 | 516 | - | - | |
| Tan01g3729 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 585 | 604 | - | - | |
| Tan01g3729 | 948 | Gene3D | - | 95 | 812 | - | - | |
| Tan01g3729 | 948 | Gene3D | - | 898 | 948 | - | - | |
| Tan01g3729 | 948 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 18 | 872 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Tan01g3729 | 948 | CDD | P-type_ATPase_H | 35 | 838 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Tan01g3729 | 948 | FunFam | Plasma membrane ATPase | 342 | 489 | - | - | |
| Tan01g3729 | 948 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 35 | 803 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Tan01g3729 | 948 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 844 | IPR023298 | - | |
| Tan01g3729 | 948 | SFLD | p-type atpase | 312 | 636 | IPR044492 | - | |
| Tan01g3729 | 948 | Gene3D | - | 327 | 622 | IPR023214 | - | |
| Tan01g3729 | 948 | FunFam | ATPase 4 plasma membrane-type | 575 | 812 | - | - | |
| Tan01g3729 | 948 | Gene3D | - | 342 | 489 | IPR023299 | GO:0000166(InterPro) | |
| Tan01g3729 | 948 | SUPERFAMILY | Calcium ATPase, transduction domain A | 133 | 230 | IPR008250 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g3729 | Tan-Chr1:102044889 | Tan09g1707 | Tan-Chr9:68623716 | 0.00E+00 | dispersed | |
| Tan01g3729 | Tan-Chr1:102044889 | Tan01g3730 | Tan-Chr1:102062980 | 0.00E+00 | tandem | |
| Tan01g3729 | Tan-Chr1:102044889 | Tan02g2635 | Tan-Chr2:94782070 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g3729 | K01535 | - | csv:101219224 | 1596.25 |