Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3734 ATGGACGAGTATTCCAGTAAAAGAGTCCATGTGGGAATTGTTTCTAGGAAGGGACCTGGTGTAGTTTTGAGGGATAACATACAGAACAGGGATCAAAGTAATCGATATGGCAACCGACTTGGCTGTACTGGCAGGATATGCTCTAGTAGTGGTGCACAAGTTGTCTGTTCAAATAAAGCCAGCTCAAAAAGACCATTCCGCAGCTCAAGTGGTAAAGAAGTTGTTGGAAGTTCCTCAAAGAGTTCCTCTGCAATCAGAAATCTCAGGAAATCTTTTCCAGAGCCTTTTGGAAAGCTATCATCTAAGCATGAAACAGATTCTTCTGAAAATGATAGCATTCAAGATGATTTGGAAGAACTGGAATTCATCTCACCTCCTGGATTGTTCCATACAGGGCTTCATGTGAAATCTGAAAGTTCGGTGCCTACTGATGCTTTGTTGATGGAAAAGGGAAGCTGCAGTACGGACTCTAACACTAAATCTAAGAGAAACTCTATTCCAAGATTTGAAGTTGACAATCAAGATACTCATGCATCAATGCGACCTAGAAGTCTTTGCCAGACATCAAACAGTGGTAACAGTAGGTACAGTTCAAGAAACCTCGCAAGTGATTCAGTATCTGAAATCATTCCATCAGATAGTTCTTTGCTGGAGCGGAACCTTGTGAGAAGGAAGAATGTAACTAAGAAGATGATACATGATGGTGAGAATAGTTCCAGTTCTAGAGGAAAGAAGGTGAGTGGAACTTCCCGTGGACAGAATTGTGTTTACCGGCATGGCATCTCTATTTCTGATCAAAGACCAGGTCGAAACGTGTTCCACAGACAAAATGTTCTCTCATCACATGGGAACCGAAGTTTGACGAGTGTATGTAGTGGGGCAAGGCATTCTTATCAAGGCATTAGTGATGATCTGTTGTTGCAGGATTCACTAGCGATGACTTCATGGATGCCTCAGTCTAATGTCTCCAGTTCCTCAAATGCTTCTAGTTCACTTCAGTCATCTTCAGAATCACACTCCAGGCACAGCATGATTTGCCCCAAACCAGAGGATTACAGTCAAAGTCTACATGACATTGGACAAGCCACCCCTGCAGAAGCTGGTATTTCCAGCACTTTGACAAATTTAAACAGTTTTAGATGCCACAATGTCAATGGAATTGCAGAGGTACTATTGGCGTTGGAGAGAATCGAACAGGAGGAAGAGCTAACTTACGAGCAAGCCATTCTTCTTGAAACGAGTTTGTTCCTCAACAGCCTAAACATCAATGATCAGCATAGAGACATGAGGCTCGACATTGATAACATGACATATGAGGAACTTTTAGATTTAGAAGAGAGAATGGGGACTGTGAGCACAGCACTGTCTGAAAAAGCACTGATAGAATGCCTTAATACAAGCATCTATCAGTCTAAACCAGGAGGAAGAGCAGCCACGGGTTCTGTCGAGGATTTGAGCGACGTCAAATGTTGTATTTGTCAGGAAGAATATGTGATTGGAGATGAAGTTGGGAAACTGCAATGTGAGCACAAGTATCATGTAGCATGCATTCAACAGTGGTTGAGGTTGAAGAACTGGTGTCCTATTTGTAAAGCATCAGCAGCAGCTTCACCCTTTCAAGTGATATAA 1629 42.36 MDEYSSKRVHVGIVSRKGPGVVLRDNIQNRDQSNRYGNRLGCTGRICSSSGAQVVCSNKASSKRPFRSSSGKEVVGSSSKSSSAIRNLRKSFPEPFGKLSSKHETDSSENDSIQDDLEELEFISPPGLFHTGLHVKSESSVPTDALLMEKGSCSTDSNTKSKRNSIPRFEVDNQDTHASMRPRSLCQTSNSGNSRYSSRNLASDSVSEIIPSDSSLLERNLVRRKNVTKKMIHDGENSSSSRGKKVSGTSRGQNCVYRHGISISDQRPGRNVFHRQNVLSSHGNRSLTSVCSGARHSYQGISDDLLLQDSLAMTSWMPQSNVSSSSNASSSLQSSSESHSRHSMICPKPEDYSQSLHDIGQATPAEAGISSTLTNLNSFRCHNVNGIAEVLLALERIEQEEELTYEQAILLETSLFLNSLNINDQHRDMRLDIDNMTYEELLDLEERMGTVSTALSEKALIECLNTSIYQSKPGGRAATGSVEDLSDVKCCICQEEYVIGDEVGKLQCEHKYHVACIQQWLRLKNWCPICKASAAASPFQVI 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102128077 102132725 - Tan0021711.1 Tan01g3734 741158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3734 542 MobiDBLite consensus disorder prediction 58 113 - -
Tan01g3734 542 SMART ring_2 490 530 IPR001841 -
Tan01g3734 542 MobiDBLite consensus disorder prediction 318 342 - -
Tan01g3734 542 Pfam Ring finger domain 489 531 IPR001841 -
Tan01g3734 542 SUPERFAMILY RING/U-box 481 534 - -
Tan01g3734 542 MobiDBLite consensus disorder prediction 178 205 - -
Tan01g3734 542 FunFam E3 ubiquitin-protein ligase arkadia 452 536 - -
Tan01g3734 542 MobiDBLite consensus disorder prediction 318 355 - -
Tan01g3734 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 536 IPR013083 -
Tan01g3734 542 MobiDBLite consensus disorder prediction 228 253 - -
Tan01g3734 542 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Tan01g3734 542 MobiDBLite consensus disorder prediction 163 177 - -
Tan01g3734 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 43 535 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
Tan01g3734 542 MobiDBLite consensus disorder prediction 96 110 - -
Tan01g3734 542 MobiDBLite consensus disorder prediction 150 205 - -
Tan01g3734 542 MobiDBLite consensus disorder prediction 58 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3734 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3734 Tan-Chr1:102128077 Tan01g3736 Tan-Chr1:102128077 3.10E-271 dispersed
Tan01g3734 Tan-Chr1:102128077 Tan01g3735 Tan-Chr1:102128077 2.60E-302 tandem
Tan05g2229 Tan-Chr5:73232611 Tan01g3734 Tan-Chr1:102128077 4.50E-27 transposed
Tan01g3734 Tan-Chr1:102128077 Tan02g2617 Tan-Chr2:94750318 2.10E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97