Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3746 ATGGAATTAAAGAAAGGGAAATTCGTGAGGTTTTACTCCAATGAGAAGCAGAATCTTGAAGTTCCATGGGAGAATAACGATGCTAAGAGGCGCATTGAGTTCCCATTACCAGTTTTCAAAATGGGTACTGCTCCATTATCGAAATTAGACAATGGGGTTGGAGATAAAAGTAAAATGAACTCAGATTTAGGGAGGCTTAAGATTTTTGTGGAGAATAATGGGTCACAACAGAAGAGGATTCTTAACCCTGAAAGTGAAACGATTCTGAGATGGAACAGGGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCTCTTTTCTTCTACCTTCCTTCTGTGATTCACCATAACAGATCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGCACTTTTGCCGATGTGTTCTATCTTTTGCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCGCCCACTTCAAGAGTTTTTGGCAAAGGTGAACTTGTCACTGATCCAAAGAAGATTGCTAAACGTTACTTAAAGTCTGATTTCTTTATAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATTATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATAGTCCTGCTTCAGTACATTCCAAGATTTTACCTGATTTTTCCATTGAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCATGGGCAGGGGCTGCTTATAACCTCATACTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGGAGGGAATTCAGTCCTATGAAATGCCTTCTTGACTATCTCGATTGTGGTACTTTAAACGATGTCGACCCCAATGTTCTCCAGATGAAGATGTCGTTTTCAATTACGTGGATATTTGCCGGTGCGATCGCAAAAAACGTCATCTCCTCCGGGTTCCTTCAGAAGTACTTCTATTGCCTTTGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGCTTGGAGACAAGTACGTTCATGGGAGAGACTGTATTTGCTATCCTCATTGCAATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGACTTATTTGCAATCGATCACTGTGAGGCTGGAGGAGTGGAGAGTGAAGAGACGAGACACAGAGGAATGGATGAAACATCGACAGCTTCCTCAAGATTTACAAGAACGAGTTCGAAGATTTGTACAATACAAGTGGCTTGCAACACGAGGAGTCGACGAAGAATCAATTTTACATGCTCTTCCAACTGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTTGACCTTGTTCGACGTGTTCCTTTCTTCGCACAAATGGACGATCAGCTACTCGATGCGATCTGCGAGCGACTGGCATCGTCTCTATGTACACAAGGTACCTACATTGTTCGTGAAGGAGATCCCGTTACCGAGATGCTCTTTATCATCCGAGGAATGCTCGAGAGTTCGACGACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACCTTAAGACCAGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTTCCAAAATCATCCATCAGCTTGCCATCTTCTACTAGAACAGTTCGAGCAATCACTGAAGTGGAAGCCTTCGCTCTCCGAGCGGAGGATCTCAAATTCGTCGCGAACCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACACACATTTCGGTTTTACTCTTATCATTGGAGAACATGGGCTGCTTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCGAAGTCACTCAGCATTCAGGAGTCTTTCTCGTTGACTCCCGAGAAGCCAATGGCCGAAGAAGCCGAACACGAAGAAGAAGAACATAATACTCCACGCTCGAATTACTCTCAAGCAAAACAAAACCTCGGCGTCACGATATTGGCGTCGAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTTAAGGATGTCAACTTATCGAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCTGAGGAACCAGATGATTAA 2157 43.49 MELKKGKFVRFYSNEKQNLEVPWENNDAKRRIEFPLPVFKMGTAPLSKLDNGVGDKSKMNSDLGRLKIFVENNGSQQKRILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIVVTVFRTFADVFYLLHMVLKFRMAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFFIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLILYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCLLDYLDCGTLNDVDPNVLQMKMSFSITWIFAGAIAKNVISSGFLQKYFYCLWWGLQNLSSYGQGLETSTFMGETVFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSIQESFSLTPEKPMAEEAEHEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102224142 102228336 + Tan0010167.1 Tan01g3746 741170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3746 718 MobiDBLite consensus disorder prediction 650 666 - -
Tan01g3746 718 MobiDBLite consensus disorder prediction 696 718 - -
Tan01g3746 718 MobiDBLite consensus disorder prediction 647 671 - -
Tan01g3746 718 Pfam Ion transport protein 91 405 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g3746 718 SUPERFAMILY cAMP-binding domain-like 408 600 IPR018490 -
Tan01g3746 718 FunFam Cyclic nucleotide-gated ion channel 1 405 469 - -
Tan01g3746 718 MobiDBLite consensus disorder prediction 696 711 - -
Tan01g3746 718 Gene3D Jelly Rolls 476 596 IPR014710 -
Tan01g3746 718 Gene3D Helix hairpin bin 406 469 - -
Tan01g3746 718 SUPERFAMILY Voltage-gated potassium channels 87 400 - -
Tan01g3746 718 ProSiteProfiles cAMP/cGMP binding motif profile. 478 608 IPR000595 -
Tan01g3746 718 FunFam Cyclic nucleotide-gated ion channel 1 476 594 - -
Tan01g3746 718 Pfam Cyclic nucleotide-binding domain 501 590 IPR000595 -
Tan01g3746 718 CDD CAP_ED 478 609 IPR000595 -
Tan01g3746 718 PRINTS EAG/ELK/ERG potassium channel family signature 441 448 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3746 718 PRINTS EAG/ELK/ERG potassium channel family signature 266 276 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3746 718 PRINTS EAG/ELK/ERG potassium channel family signature 373 384 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3746 718 PRINTS EAG/ELK/ERG potassium channel family signature 391 400 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3746 718 PRINTS EAG/ELK/ERG potassium channel family signature 347 364 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3746 718 PRINTS EAG/ELK/ERG potassium channel family signature 149 158 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan01g3746 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 61 695 - -
Tan01g3746 718 SMART cnmp_10 478 609 IPR000595 -
Tan01g3746 718 Gene3D - 108 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3746 Tan-Chr1:102224142 Tan09g1637 Tan-Chr9:68010666 3.60E-275 dispersed
Tan01g3746 Tan-Chr1:102224142 Tan01g3748 Tan-Chr1:102270451 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3746 K05391 - csv:101211072 1199.5