Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3747 ATGGCGCCGAGATTGGGGTTTTTGTGTTGGTGGGGAAAAGAGAAAGACCCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAACTTCTCCGTCGTGGAGATCGACGGTCCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCCAAACAAGTCACGTGGGTTCTTCTTCTTAAGGCCAATCGAGCTGTCGGTTGCATAACTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGCGGGAAGTTGGGAAGAGGGAGGTTACTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATGGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATCCTAATCTGCACATTCCTCAGGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCTCCCCTCATTCAAACACTCTCTAAATTTTGCACTGTTCTGTTTCTTATCCAATCGGTGGATCGTATGATCCTTTGTTTTGGTTGCCTATGGATAAAGTACAAAAGAATTGAACCCAAAATTGAAGGGGATCCCTTCAGGTTGGATGATGTGGAGGGAGCTGGGAACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAATGAGCGCGAGGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCGTTTACTAATTCAAGTGCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAGGCAGAGGTTGCTAAATGGATAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGGGTTGTGATTATGTTAGAGACTATGAATTTGTAACAATTTTTGATGCTGACTTTCAACCAAATCCAGATTTTCTTAAGCTGACTGTCCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTGAACAAGGACGAAAACTTGTTGACACGTCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAAGTTAATGGGGTGTTTCTTAATTTCTTCGGTTTCAATGGCACTGCTGGTGTTTGGAGAATTAAAGCCCTTGAGGAGTCCGGAGGGTGGCTTGAAAGAACAACAGTAGAGGATATGGATATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAATGACGTTAAGGTCCTCTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAATCATAAGTTCTAAGATAGCAGCATGGAAAAAGGCAAATTTGATATTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACGTTGTTCTGCATAATTCTTCCTCTGACCATGTTCGTACCAGAAGCCGAGCTTCCTTTATGGGTGATCTGCTATGTGCCCGTCTTTATGTCATTTCTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATCGTCCCCTACCTACTTTTCGAGAACACCATGTCAGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGCTGGGCAGTTCTTATGAGTGGATTGTGACTAAAAAGGCTGGAAGGTCCTCCGAATCTGACTTACTAGCAGCTGCTGAAAGGGACACTAAGATAATGAATCAAGCACAGATCTATAGAGGCGCTTCCGAGAGTGAGCTTTCTGAGTTGAGCCATTTAAAAGAACGCAAAGAGGTAGTCGCTGTACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCGCTCGCGTTTCTTTTACTTTTAGCTTCACTCCGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACTTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAACTAA 2049 43.29 MAPRLGFLCWWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGRLLFGVIRVFLVTSMAILAFEMLAYFKGWHYFQNPNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCTVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFRLDDVEGAGNKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQLLIKAEVAKWIRTGYKAGNLKSAMGCDYVRDYEFVTIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKIAAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVICYVPVFMSFLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDTKIMNQAQIYRGASESELSELSHLKERKEVVAVPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMN 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102230663 102233473 - Tan0016899.1 Tan01g3747 741171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3747 682 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 517 IPR029044 -
Tan01g3747 682 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 436 IPR029044 -
Tan01g3747 682 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 681 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Tan01g3747 682 FunFam Glycosyltransferase-like protein, family 2 221 436 - -
Tan01g3747 682 Pfam Glycosyl transferase family group 2 311 523 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3747 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3747 Tan-Chr1:102230663 Tan11g0591 Tan-Chr11:5279211 7.90E-264 dispersed
Tan01g3747 Tan-Chr1:102230663 Tan01g3749 Tan-Chr1:102276965 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g1371 . 220 380 REM Transcription Factor Family AT1G49480 71.4 7.3e-57 218.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan05g1371 . 220 380 REM Transcription Factor Family AT1G49480 71.4 7.3e-57 218.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38