Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3748 ATGGAATTAAAGAAAGGGAAATTCGTGAGGTTTTACTCCAATGAGAAGCAGAATCTTGAAGTTCCATGGGAGAATAACGATGCTAAGAGGCGCATTGAGTTCCCATTACCAGTTTTCAAAATGGGTACTGCTCCATTATCGAAATTAGACAATGGGGTTGGAGATAAAAGTAAAATGAACTCAGATTTAGGGAGGCTTAAGATTTTTGTGGAGAATAATGGGTCACAACAGAAGAGGATTCTTAACCCTGAAAGTGAAACGATTCTGAGATGGAACAGGGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCTTCCGGATGGCTTATGTTTCGCCCACTTCAAGAGTTTTTGGCAAAGGTGAACTTGTCACTGATCCAAAGAAGATTGCTAAACGTTACTTAAAGTCTGATTTCTTTATAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATTATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATAGTCCTGCTTCAGTACATTCCAAGATTTTACCTGATTTTTCCATTGAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCATGGGCAGGGGCTGCTTATAACCTCATATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGGAGGGAATTCAGTCCTATGAAATGCCTTCTTAACTATCTCGATTGTGGTACTTTAAACGATGTCGACCGTAGGATATGGGAAGTAAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTCGTTTTCAATTACGGGATATTTGCCGGTGCGATCGCAAAAAACGTCATCTCCTCCGGGTTCCTTCAGAAGTACTTCTATTGCCTTTGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGCTTGGAGACAAGTACGTTCATGGGAGAGACTGTATTTGCTATCCTCATTGCAATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGAGACGAGACACAGAGGAATGGATGAAACATCGACAGCTTCCTCAAGATTTACAAGAACGAGTTCGAAGATTTGTACAATACAAGTGGCTTGCAACACGAGGAGTCGACGAAGAATCAATCTTACATGCTCTTCCAACTGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTTGACCTTGTTCGACGTGTTCCTTTCTTCGCACAAATGGACGATCAGCTACTCGATGCGATCTGCGAGCGACTGGCATCGTCTCTATGTACACAAGGTACCTACATTGTTCGTGAAGGAGATCCCGTTACCGAGATGCTCTTTATCATCCGAGGAATGCTCGAGAGTTCGACGACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACCTTAAGACCAGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTTCCAAAATCATCCATCAGCTTGCCATCTTCTACTAGAACAGTTCGAGCAATCACTGAAGTGGAAGCCTTCGCTCTCCGAGCGGAGGATCTCAAATTCGTCGCGAACCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACACACATTTCGGTTTTACTCTTATCATTGGAGAACATGGGCTGCTTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCTAAGTCACTCAGCATTCAGGAGTCTTTCTCGCCGACTCCCGAGAAGCCAATGGCCGAAGAAGCGAACACGAAGAAGAAGAACATAATACTCCACGCTCGAATTACTCTCAAGCAAAACAAAACCTCAGCGCCACGATATTGGCGTCGAGGTTTGCTGCAAACACACGTGAGAGGAGCACAAAAGCTTAAGGATGTCAACTTATCGAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCTGAGGAACCAGATGATTAA 1998 43.64 MELKKGKFVRFYSNEKQNLEVPWENNDAKRRIEFPLPVFKMGTAPLSKLDNGVGDKSKMNSDLGRLKIFVENNGSQQKRILNPESETILRWNRVFLFSCLTALFFRMAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFFIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLILYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCLLNYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFAGAIAKNVISSGFLQKYFYCLWWGLQNLSSYGQGLETSTFMGETVFAILIAIMGLVLFAHLIGNMQRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSIQESFSPTPEKPMAEEANTKKKNIILHARITLKQNKTSAPRYWRRGLLQTHVRGAQKLKDVNLSKLRKPDEPDFSEEPDD 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102270451 102274629 + Tan0009148.1 Tan01g3748 741172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3748 665 SUPERFAMILY Voltage-gated potassium channels 88 360 - -
Tan01g3748 665 SUPERFAMILY cAMP-binding domain-like 360 547 IPR018490 -
Tan01g3748 665 FunFam Cyclic nucleotide-gated ion channel 1 356 416 - -
Tan01g3748 665 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 104 598 - -
Tan01g3748 665 SMART cnmp_10 425 556 IPR000595 -
Tan01g3748 665 Gene3D - 78 359 - -
Tan01g3748 665 CDD CAP_ED 425 556 IPR000595 -
Tan01g3748 665 Pfam Ion transport protein 104 359 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g3748 665 Pfam Cyclic nucleotide-binding domain 448 537 IPR000595 -
Tan01g3748 665 Gene3D Jelly Rolls 423 543 IPR014710 -
Tan01g3748 665 FunFam Cyclic nucleotide-gated ion channel 1 423 541 - -
Tan01g3748 665 Gene3D Helix hairpin bin 360 416 - -
Tan01g3748 665 ProSiteProfiles cAMP/cGMP binding motif profile. 425 555 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3748 Tan-Chr1:102270451 Tan09g1637 Tan-Chr9:68010666 1.30E-239 dispersed
Tan01g3746 Tan-Chr1:102224142 Tan01g3748 Tan-Chr1:102270451 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3748 K05391 - csv:101211072 1032.71