Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3749 ATGGCGCCGAGATTGGGGTTTTTGTGTTGGTGGGGAAAAGAGAAAGACCCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAACTTCTCCGTCGTGGAGATCGACGGTCCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCCAAACAAGTCACGTGGGTTCTTCTTCTTAAGGCCAATCGAGCTATCGGTTGCATAACTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGCGGGAAGTTGGGAAGAGGGAGGTTACTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATGGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATCCTAATCTGCACATTCCTCAGGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCTCCCCTCATTCAAACACTCTCTAAATTTTGCACTGTTCTGTTTCTTATCCAATCGGTGGATCGTATGATCCTTTGTTTTGGTTGCCTATGGATAAAGTACAAAAGAATTGAACCCAAAATTGAAGGGGATCCTTCAGGTTGGATGATGTGGAGGAGCTGGGAACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTTTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCGTTTACTAATTCAAGTGCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAGGCAGAGGTTGCTAAATGGAGTCAAAAGGGGGTAAACATAATCTATCGCCATCGATTAGTAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGGGTTGTGATTATGTTAGAGACTATGAATTTGTAACAATTTTTGATGCTGACTTTCAACCAAATCCAGATTTTCTTAAGCTGACTGTCCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTGAACAAGGACGAAAACTTGTTGACACGTCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAAGTTAATGGGGTAATTAAAGCCCTTGAGGAGTCCGGAGGGTGGCTTGAAAGAACAACAGTAGAGGATATGGATATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAATGACGTTAAGGTCCTCTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAATCATAAGTTCTAAGATAGCAGCATGGAAAAAGGCAAATTTGATATTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACGTTGTTCTGCATAATTCTTCCTCTGACCATGTTCGTACCAGAAGCCGAGCTTCCTTTATGGGTGATCTGCTATGTGCCCGTCTTTATGTCATTTCTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATCGTCCCCTACCTACTTTTCGAGAACACCATGTCAGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGCTGGGCAGTTCTTATGAGTGGATTCTGCTGAAAGGGGACACTAAGATAATGAATCAAGCACAGATCTATAGAGGCGCTTCCGAGAGTGAGCTTTCTGAGTTGATTAACAAGATATATCGGAAAGAGCTAGCGCTCGCGTTTCTTTTACTTTTAGCTTCACTCCGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACTTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAACTAA 1932 42.96 MAPRLGFLCWWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAIGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGRLLFGVIRVFLVTSMAILAFEMLAYFKGWHYFQNPNLHIPQASELQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCTVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPSGWMMWRSWEQVSNGSCSNSHVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIIYRHRLVRTGYKAGNLKSAMGCDYVRDYEFVTIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKIAAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVICYVPVFMSFLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWILLKGDTKIMNQAQIYRGASESELSELINKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMN 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102276965 102280483 - Tan0012715.1 Tan01g3749 741173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3749 643 FunFam Glycosyltransferase-like protein, family 2 232 428 - -
Tan01g3749 643 SUPERFAMILY Nucleotide-diphospho-sugar transferases 239 510 IPR029044 -
Tan01g3749 643 Pfam Glycosyl transferase family group 2 318 515 IPR001173 -
Tan01g3749 643 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 428 IPR029044 -
Tan01g3749 643 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 642 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3749 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3749 Tan-Chr1:102276965 Tan11g0591 Tan-Chr11:5279211 4.20E-235 dispersed
Tan01g3747 Tan-Chr1:102230663 Tan01g3749 Tan-Chr1:102276965 0.00E+00 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g1371 . 220 380 REM Transcription Factor Family AT1G49480 71.4 7.3e-57 218.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan01g3747 . 1 682 REM Transcription Factor Family AT2G24630 76.0 2.5e-310 1061.6
Tan01g3749 . 1 643 REM Transcription Factor Family AT2G24630 70.2 6.3e-277 950.7
Tan11g0591 . 6 666 REM Transcription Factor Family AT2G24630 69.0 5.0e-266 914.4
Tan01g4659 . 1 706 REM Transcription Factor Family AT2G24630 64.2 1.8e-263 906.0
Tan02g1687 . 5 700 REM Transcription Factor Family AT2G24630 65.3 1.9e-257 885.9
Tan06g1208 . 5 694 REM Transcription Factor Family AT2G24630 61.7 9.1e-244 840.5
Tan11g0963 . 74 304 REM Transcription Factor Family AT2G24630 50.2 6.7e-61 233.0
Tan05g1371 . 220 380 REM Transcription Factor Family AT1G49480 71.4 7.3e-57 218.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38