Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3769 ATGGTAGAAACAGAACAAGAGGAGAACGTTGAATTTCAATGGGGCAAAAGGAAAGGAATTGGTGGGAAGAAGAAGGACGTGACCTTTTATGAATCTTTTACTTATGATGGTGTAGATTATTTTCTTTATGACTCTGTTTACCTATATAAGGAAGGTGAACCAGAGCCATACATTGGCAAAATTCTTAAAATCTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATTCTTTGGTTTTTTCGACCATGTGAGATTTTTAATTATCTTGGAGCTGAAGACACACGGGATAATGAAGTATTTTTGGCATCCGGTGATGGAGTTGGCCTTGCCAATGTTAATCCTCTGGAAGTAATTGCTGGAAAGTGCAGTGTTCTCTGCGTTTCAAATGACAGCAGAAATCCACGACCCTCAGATGAAGCACTCAGAAAGGCTGATTTTGTATTTTGTCGTACATTTGATGTTGGAAAACTAGAGGTCTGCAATGAGATGTGTGAAAAAATTGCTGGAGTAGAAGTTAAATTTTTACTCAATAAAGTAGATACGTCAAATGATGTTAAGAGGACCGATGAGGATGGGAAAGATGCAAGTAGCATTGCAATTGTAAATACTGAATCAGAAGATCCTTCTGGACAGAACACTTCTAATGGAGAATTAATTTTGAAAACAAATGAAAGCTCTGTCGAGAAGTCCACAAAGGAAAATGTTGATTTGAATGCTTCTCTGTCTATAGAGAAATCTTCCAATGAAGAGAAGTCTGATGCATTTGCGAGTGATGGAGGAAAAGGAATGGTTAATACTAGTAGCAAACAAGAAAACATCTTAGATGATAAGGTCTCTCCAAAGCTTAGAATTGATTCTAACGAGACATCTGGTAAAGATGTTAAAGCGCTAGCTAAGGATGTTGAAGGTAGAGTTAAAAATCCCAGGGACTCCGCTGAAGTTGAGCATAGGCCAGTGAAGAAGGCAAAGCTAGATAGTTCTGTTCAATTATCTCTTGGAAAGACCAAGAATGACATTCAAAAGGCTGGCCTCAATCACAATAATGGTGATACGCAGGCTTCCTCACCTAAGGTTCTTGTTTCTGAAGATGCTTCCAGAACCAAAAATGTAAAAGATTCTCATGGAACAAAAGACAGCCTTATAAAGAAGCCCAAGCTAGATGAGAAGCCAACAAAGATTTCTAATGACAAGAACCTAAAGGCCTCTTCCCCTTCAGTTACTGACTGCAAAACAGATGGTCAAATTGTGGAAGTTACTAGAAGGCCAGACGCTGATAGAAGCAGATGGTTCAAGGGACTTCCATGGGAAGAAAGAATGAAAAATGCACATGAGCAAGGAACACTTGTTCTGATTCAGAACTTGGATCCTGCTTACACTTCAGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAACGAGAGTTGCACAGCTAAGATGATTCAGCGTACTGCAATTTCTATGCCTCACATAGGTCAAGCTTATGTTGTTTTCAAAACTAAGGAAGCAGCAGAGAAAGTGGTTAGAAAACTAGATGAAGGTTGCTTAGTACTTGCAAATGGGAGTGCTCTTGTTGGTAGCTTTGCAACTCCTCATCTTCCGTCAAAGAAACAAACTTTTTTTGGGCATCACAGTATTGATAAGCTAAGGCATCAAATGCAACGTGAGATGAAAGAAGCTGTATCAACCTCGCATTGTTCTCAGCCGAATACAGTAGAATATGACATGGCCATGGAATGGTGTTTACTACAAGAAAGATCAGAACTCGCCTGTAAAAAGTTGTTCAAGCAACAAGAAGAGGAGTTAAGAAAACTCAAGAGCAAAAGTACTAAATTTGACTCTTACAAGATGTCTGTGACACCAACCATCAATTTATTATCATTTTTTTCTGAGTTCATCAATTTCTTATCATATTAA 1914 38.66 MVETEQEENVEFQWGKRKGIGGKKKDVTFYESFTYDGVDYFLYDSVYLYKEGEPEPYIGKILKIWQNPDKTKKVKILWFFRPCEIFNYLGAEDTRDNEVFLASGDGVGLANVNPLEVIAGKCSVLCVSNDSRNPRPSDEALRKADFVFCRTFDVGKLEVCNEMCEKIAGVEVKFLLNKVDTSNDVKRTDEDGKDASSIAIVNTESEDPSGQNTSNGELILKTNESSVEKSTKENVDLNASLSIEKSSNEEKSDAFASDGGKGMVNTSSKQENILDDKVSPKLRIDSNETSGKDVKALAKDVEGRVKNPRDSAEVEHRPVKKAKLDSSVQLSLGKTKNDIQKAGLNHNNGDTQASSPKVLVSEDASRTKNVKDSHGTKDSLIKKPKLDEKPTKISNDKNLKASSPSVTDCKTDGQIVEVTRRPDADRSRWFKGLPWEERMKNAHEQGTLVLIQNLDPAYTSGEVEDIVWHAFNESCTAKMIQRTAISMPHIGQAYVVFKTKEAAEKVVRKLDEGCLVLANGSALVGSFATPHLPSKKQTFFGHHSIDKLRHQMQREMKEAVSTSHCSQPNTVEYDMAMEWCLLQERSELACKKLFKQQEEELRKLKSKSTKFDSYKMSVTPTINLLSFFSEFINFLSY 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102527891 102538266 - Tan0003334.1 Tan01g3769 741193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3769 637 SUPERFAMILY RNA-binding domain, RBD 438 520 IPR035979 GO:0003676(InterPro)
Tan01g3769 637 MobiDBLite consensus disorder prediction 240 409 - -
Tan01g3769 637 MobiDBLite consensus disorder prediction 198 218 - -
Tan01g3769 637 FunFam Bromo-adjacent homology (BAH) domain-containing protein 8 159 - -
Tan01g3769 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 447 530 IPR000504 GO:0003723(InterPro)
Tan01g3769 637 CDD RRM_SF 449 511 - -
Tan01g3769 637 MobiDBLite consensus disorder prediction 274 323 - -
Tan01g3769 637 PANTHER PROTEIN ANTI-SILENCING 1 1 608 - GO:0003723(PANTHER)|GO:1905642(PANTHER)
Tan01g3769 637 Gene3D - 7 162 IPR043151 -
Tan01g3769 637 MobiDBLite consensus disorder prediction 364 395 - -
Tan01g3769 637 MobiDBLite consensus disorder prediction 185 218 - -
Tan01g3769 637 MobiDBLite consensus disorder prediction 328 362 - -
Tan01g3769 637 SMART BAH_4 38 161 IPR001025 GO:0003682(InterPro)
Tan01g3769 637 Pfam BAH domain 44 129 IPR001025 GO:0003682(InterPro)
Tan01g3769 637 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682(InterPro)
Tan01g3769 637 Gene3D - 434 532 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3769 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3769 Tan-Chr1:102527891 Tan04g2617 Tan-Chr4:85354396 9.60E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43