Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3773 ATGGTTCTCTTTCAGCTCTCTAAAATCAACCCCTCTTTCTTTATTTCACCAATTCACCGCAGTTTTAGCGTCTTTGCAAAAACCAACAAACCCACAATCGCGGCAGCAGCAGCCCCCGTTCTCACTTCGACTTCATTCCCCGTCCCCAAATCCACTCTCACGGCCGCCGAACCCATTCCGATCACCGATTTTTCAGAATATCCCGAAGAAATCCAGTTACCCATCTCCCCTGAGAAGCTCTTTGTTCCGCCTGAAACGGACGCCGCCGCCGTGGGAGCGAGAATCTTGAAGGGGTCGAACATTGTGTTGGGTCGGTACGCGAGGGATGCGCAGGTTTCTGAGGCGGATTTTGTGAAGAGTAGTGTGAGAACCGAGGACTGCCCTTCTGATGGGCTTCCTGAATTTGCCCTTGTTGGGCGCTCGAATGTGGGGAAATCGTCACTGTTGAACTCGCTCGTTCGGCGGAAGAAGCTCGCTCTGACCTCCAAGAAACCAGGAAAAACACAGTGCATAAATCATTTTCGAATTAATGATAGTTGGTACTTGGTCGATTTGCCTGGATATGGGTATGCTGCTGCACCACAGGAACTTCGAACAGATTGGAACAAGTTTACCAAGGACTATTTTCTGAACCGGTCAACGTTGGTTTCAGTTTTCCTTCTTATAGATGCAAGCATTCCTGCCAAACCAATTGATCTGGACTATGCCAGTTGGTTGGGTCAGAATCAGATTCCAATGACGATAATATTTACAAAATGCGACAAACGAAAGAAGAAAAAGAATGGTGGAAAAAGACCAGAAGAAAACGTGAGCGACTTTCAGGAACTAATAAGTGGATTTTTCCAGACGACTCCGCCATGGATTATGACTAGCAGTGTCACCCATCAGGGTCGGGATGAAATACTTCTACATATTGCTCAGCTGAGGAACTACTGGCTCAAGCACTGA 948 47.47 MVLFQLSKINPSFFISPIHRSFSVFAKTNKPTIAAAAAPVLTSTSFPVPKSTLTAAEPIPITDFSEYPEEIQLPISPEKLFVPPETDAAAVGARILKGSNIVLGRYARDAQVSEADFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYAAAPQELRTDWNKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLDYASWLGQNQIPMTIIFTKCDKRKKKKNGGKRPEENVSDFQELISGFFQTTPPWIMTSSVTHQGRDEILLHIAQLRNYWLKH 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102574102 102578449 - Tan0000886.3 Tan01g3773 741197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3773 315 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 75 312 - -
Tan01g3773 315 Gene3D - 106 311 IPR027417 -
Tan01g3773 315 NCBIfam ribosome biogenesis GTP-binding protein YihA/YsxC 115 305 IPR019987 GO:0005525(InterPro)
Tan01g3773 315 Pfam 50S ribosome-binding GTPase 135 252 IPR006073 GO:0005525(InterPro)
Tan01g3773 315 Hamap Probable GTP-binding protein EngB [engB]. 120 309 IPR019987 GO:0005525(InterPro)
Tan01g3773 315 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 131 311 IPR030393 GO:0005525(InterPro)
Tan01g3773 315 CDD YihA_EngB 134 308 IPR030393 GO:0005525(InterPro)
Tan01g3773 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 311 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3773 K03978 - - csv:101215737 570.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3771 Tan-Chr1:102574102 Tan01g3773 Tan-Chr1:102574102 1.10E-180 dispersed
Tan01g3773 Tan-Chr1:102574102 Tan05g1647 Tan-Chr5:43956971 4.20E-87 dispersed
Tan01g3772 Tan-Chr1:102574102 Tan01g3773 Tan-Chr1:102574102 1.10E-180 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g337 Blo01g01709 . . . . Bpe02g00234 . Bma01g02486 . . Cma01g01594 . Car09g00481 . . . Cpe06g00416 . . . . . . . . . . . . . . . . . . Lsi04g02219 Csa03g04429 Chy04g00272 . . . . . . . . . Sed01g1228 Cmo01g01642 Cmo09g00539 Cma09g00549 . Car01g01213 . . Cpe02g00383 Bhi09g02412 Tan01g3773 Cmetu11g1083 . Hepe01g2113 Mch11g0651 . . . . . . . . . . . Cme04g00302
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005769 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 39