Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3776 ATGGGAGAGTCAGGTGAAGAAGAGGCTCTTTCTAGAACCATAAACAAACATCAAACGATCACTGCTACAGTCAAGAAAAGATGGACTCGATCGGCTCCCGTCAAGGATGTTTCTCCGTATAACAAAAAGAAAACACGTCCCACTCTAGGTTCTGAAGATGTCCAAAGTGAATTCTGTTGTTTAGATTGCACATCCAGCGAAAGTTGTGGAATAGTGCGCTTCAGAACAAAATTAATGAACATTTTGATAGAAAGAGGGAAACCTCAGGAAGTCCAGAACGTTTTTGACAATTTGATTGCGGAGGGGCATAGGCCTTCTCTAGTAACATACACAACCCTGTTGTCTGCATTGACTGTCCAGAAGCGCTTCAAGCTTATAAATTCGATTATACTAATGGTGGAAGAAAGAGGTTTGATACCGGACTCTGTATTTTTTAATGCCGTTATCAATGCTTTCTCTGAAGCTGGTAATGTGGAAGAAGCCATGATAACTTTTAGAAAAATGAAGGCTAGTGGACTAAGGCCAAGTACAAGCACTTTCAACACGTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTAAAGAATTGCTGGACTTGATGTACAGAGAGGAAAATTTAAAACCCAATCTGAGAACTTGTAATGTACTTGTCAGAGCATGGTGTAAGAACAAGAAAATCCCAGAGGCATGGAATGTGGTGCAAAATATGATAGCCCTGGGAATCAAACCAGATGCTGTTACTTACAACACCATAGCGACTGCTCATGCTCAGAGTGGAGAAACAAATCGAGCTGAAGAGATTATTCAACAGATGCAAGATAACGGTATTCAACCTAATCAGCGGACTTGCAGCATCGTAGCTTGTGGATATTGCAAGGAAGGTAAACTAAAGGAGGCCATGAGGTTTGTATACAGGATGAAGAATCTTGGCGTTCAGCCTAATTTGGTTCTTTTCAACTCAGTGATCAAGGGATTTGTCGAGTCGATGGATAGAGATGGGGTTGACAAGGTTTTGATGCTGATGGAGGAATTTGGGGTCAAGCCAGATGTGATTACTTTTAGCACAGTCATGAATGCGTGGAGCACGGCTGGATTCATGGAGAAGTGCAGAGAAATTTTCAATGAGATGGTCAAGGCTGGTATCGAACCAGACGCCCATGCATACAGCATTCTAGCCAAAGGGTACGTGCGTTCACAAGAACCAGAAAAGGCTGAAGAACTATTAAATACCATGACTAGATATGGAAAACGTCCAAACGTTGTTATTTTTACAACCATCATCAGTGGATGGTGCAGTTCAGGCAGAATGGAGAATGCCATAAAGATTTTATACAACATGTGTGAATATTATGGAGTTTCTCCCAATTTGAAGACATTTGAGACTATAATATGGGGATATGGAGAAACAAAACAGCCATGGAAAGCAGAAGAAATGCTTCAAATAATGGAGGAATTTGAAGTTAAACCTGAGAAATCTACCATCTTATTAGTTGCAGAAGCCTGGCGCTCTATTGGATTGACAAAAGAAGCAAACAGGATTCTGAGCATCATGAAAACCATGGAAACGACTGATCAAATGGAGGGGAAGGATGAGAAGCGAGCGGAGAACTCGAATAAGTTCTATCAGAAGCAGCTTTCTGGGCCCTCTTATACAAATATATTGCAGATTCCGAGTGCTACTGCAGTTGATCAAAAGGGGTCAATCACTGGAACCAAAAGAAACCGTGTCTTACTGAGAGATGCTGATTTTTCTTTAGAAAGTTCGTGGCTAGCAACAAAATCCATTTATCAGTCTCGCACTTGCAAGTTTGGGGAAAGGTTGCCTATCATCTCTCGCAAGCAGTCGCAAGCACAACTTGGTATGTACAGTCATTTCTCTCATTCGTGTATAGTCGTGACATTGATGTAA 1917 41.42 MGESGEEEALSRTINKHQTITATVKKRWTRSAPVKDVSPYNKKKTRPTLGSEDVQSEFCCLDCTSSESCGIVRFRTKLMNILIERGKPQEVQNVFDNLIAEGHRPSLVTYTTLLSALTVQKRFKLINSIILMVEERGLIPDSVFFNAVINAFSEAGNVEEAMITFRKMKASGLRPSTSTFNTLIKGYGIAGKPEETKELLDLMYREENLKPNLRTCNVLVRAWCKNKKIPEAWNVVQNMIALGIKPDAVTYNTIATAHAQSGETNRAEEIIQQMQDNGIQPNQRTCSIVACGYCKEGKLKEAMRFVYRMKNLGVQPNLVLFNSVIKGFVESMDRDGVDKVLMLMEEFGVKPDVITFSTVMNAWSTAGFMEKCREIFNEMVKAGIEPDAHAYSILAKGYVRSQEPEKAEELLNTMTRYGKRPNVVIFTTIISGWCSSGRMENAIKILYNMCEYYGVSPNLKTFETIIWGYGETKQPWKAEEMLQIMEEFEVKPEKSTILLVAEAWRSIGLTKEANRILSIMKTMETTDQMEGKDEKRAENSNKFYQKQLSGPSYTNILQIPSATAVDQKGSITGTKRNRVLLRDADFSLESSWLATKSIYQSRTCKFGERLPIISRKQSQAQLGMYSHFSHSCIVVTLM 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102592723 102596581 + Tan0021665.1 Tan01g3776 741200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3776 638 Gene3D Tetratricopeptide repeat domain 71 188 IPR011990 GO:0005515(InterPro)
Tan01g3776 638 Gene3D Tetratricopeptide repeat domain 189 295 IPR011990 GO:0005515(InterPro)
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Tan01g3776 638 Pfam PPR repeat 277 310 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 211 IPR002885 -
Tan01g3776 638 SUPERFAMILY TPR-like 215 308 IPR011990 GO:0005515(InterPro)
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Tan01g3776 638 PANTHER OS01G0228400 PROTEIN 14 636 - -
Tan01g3776 638 Pfam PPR repeat 319 349 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 457 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Tan01g3776 638 Gene3D Tetratricopeptide repeat domain 296 415 IPR011990 GO:0005515(InterPro)
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Tan01g3776 638 Gene3D Tetratricopeptide repeat domain 416 492 IPR011990 GO:0005515(InterPro)
Tan01g3776 638 Pfam PPR repeat family 140 187 IPR002885 -
Tan01g3776 638 Pfam PPR repeat family 211 259 IPR002885 -
Tan01g3776 638 Pfam PPR repeat family 351 399 IPR002885 -
Tan01g3776 638 Pfam PPR repeat family 421 468 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 215 248 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 145 176 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 179 212 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 285 317 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 424 458 IPR002885 -
Tan01g3776 638 NCBIfam pentatricopeptide repeat 319 353 IPR002885 -
Tan01g3776 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3776 K17710 - - mdm:103441183 814.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3776 Tan-Chr1:102592723 Tan09g1278 Tan-Chr9:65008364 2.60E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23