Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3787 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTCGGATTAGATCCGCATTAAACTACGGTAAAGGAAGAAGCCATGAGGGGCTAATCAAGTACGGGTTCTGCCTGGTAAAAGGAAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAGTTGGGGCTATTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCAAATATCCTGAAGGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCCTATGAGAAGACGGACCAGGCAATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCAACGACTATGGGTGGCCAATGTTGGAGATTCACGTGCAGTTCTTTCAAGAGGTGGTGAAGCTATGCAGATGACCATCGATCATGAGCCGAATACGGAACGTGGCATCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGACGTACCTCGAGTGAACGGCCAGCTAGCTGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACTTGCGATCGGATCCTGACATACGTTGTATCAATATAGACACCAACATGGACATATTAATCCTTGCCAGCGACGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCAGTCGATATTGCTCGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACCGAGGCTTTACAGAAAGAAAGTAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA 840 43.57 MDKLCCFNASYSRIRSALNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAMQMTIDHEPNTERGIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRCINIDTNMDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALQKESKDDISCIVVRFR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102701702 102705638 + Tan0020942.1 Tan01g3787 741211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3787 279 Gene3D - 26 279 IPR036457 -
Tan01g3787 279 SUPERFAMILY PP2C-like 26 278 IPR036457 -
Tan01g3787 279 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Tan01g3787 279 SMART PP2C_4 23 276 IPR001932 -
Tan01g3787 279 SMART PP2C_SIG_2 42 278 IPR001932 -
Tan01g3787 279 CDD PP2Cc 30 278 IPR001932 -
Tan01g3787 279 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Tan01g3787 279 FunFam Probable protein phosphatase 2C 39 21 279 - -
Tan01g3787 279 PANTHER PROTEIN PHOSPHATASE 27 276 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0513 Tan-Chr1:4755466 Tan01g3787 Tan-Chr1:102701702 3.10E-121 dispersed
Tan01g3787 Tan-Chr1:102701702 Tan02g0201 Tan-Chr2:1718196 5.20E-89 dispersed
Tan01g3787 Tan-Chr1:102701702 Tan02g0200 Tan-Chr2:1718196 1.40E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3787 K17506 - csv:101213414 536.184