Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3792 ATGTCCAGGCCTTTACATCGAGGTGCGGCCGGTGTCAAGGTACATGGCCATGGCGATGATAAATGGGATTCCCAAATGAAAGATAAAACTGAAAAGGAAGAGGTGGACAGAAGAGTTTCTTCAGATCATGGAGGAAATCTGGCTTCGCGGTTTCCGATTCGCCTACTTCTTCCAGACAATTCCCCTTCCAAATATGGAAGCACTGAGAATGGCTTTGCTTCTGATTCTTTTTTAGTTGGGAACTCACGAAGTCGGCATCAATTCATACTGCTTATGTTGAGATTAAGTTTAGTATTGATAATAATTCTTGCTCTTACTGGATCCTTTTGGTGGACACTCTCCATTTCGGGTTCATCCCAAGTTCAAATATTCCATGGTTATCGACGACTCCAAGAGCAGCTTGTTTCGGACCTTTGGGATATAGGGGAGATTTCCCTTGGTCCTTCAAGGTTGAAAGAGCTCGAATTCTGTTCTCCAGAACTTGAGAATTATGTTCCCTGCTTCAATTCTAGCGATACTCAAGATGATGGCTATGATAGACATTGTGAGCCTAGTTCGTGGGAAAATTGTTTGTTACAACCTCCCTCGAAATACAAGATTCCACTTAGATGGCCCACTGGAAGAGATGTTATCTGGGTAACAAATGTGAAAATTACAGCACAGGAGGTCCTTTCCTCAGGAAGCTTGACCAAAAGGATGATGATGCTTGAGGAAGAACAAATATCCTTTCGTTCTGCCTCTCCAATGTTTGATGGTGTTGAAGATTATTCTCACCAAATTGCAGAAATGATTGGTCTGAGAAATGAATCTAATTTCAGAGAAGTTGGGGTAAGAACCATACTGGATATAGGGTGTGGTTATGGGAGTTTTGGAGCACATCTTTTTTCCAAACATCTCTTAACTATGTGCATCGCAAATTATGAGGCTTCAGGCAGTCAGGTTCAACTAACTCTTGAAAGGGGTCTTCCTGCAATGCTTGGTTCTTTTACTTCGAAACAGTTGCCATATCCATCTCTTTCCTATGATATGGTTCATTGTGCGCGATGTGGTGTTGACTGGGATAGTAAAGATGGTAAATACTTGATTGAGGTTGATAGAGTTTTGAAGCCAGGTGGGTATTTTGTGTGGACATCGCCACTTACAAATACTCAGGGTGTTCTTCACAAAAAAGAGAAGCAGAAAAGGTGGAACTACATTCAGGATTTTGTAGAATATCTGTGCTGGGAGATGTTGTCTCAACAAGATGAAACTGTTGTCTGGAAGAAAACTAGTAAAAGTAATTGTTATAGCTCACGGAAGCCAGATTCGTCTCCTCCAATATGTGGTAAAGGTCATGATATTGAATCTCCATATTACAGACCACTCCAGGCCTGCATCGGGGGAAGAAAAAGTCGGCGTTGGGTTCCTATTAACGAAAGAAGAACTTGGCCTTCGAGGGCTAACTTGAACAAGAGTGAACTGGCTGTGCATGGATTGGCTTTCGATGATTTCACAGAGGATTCTCTAAACTGGAAAATGGCAGTGAAAAACTACTGGTCTCTTTTGTCACCACTAATCTTCTCGGATCATCCAAAAAGACCTGGCGATGAGGATCCTTTACCCCCATACAACATGCTCCGGAATGTGTTAGATATGAATGCCCATTTTGGTGGTTTCAATTCTGCATTATTGGAAGCTGGGAAGTCTGTATGGGTCATGAACGTGGTGCCAACAGATGGACCTAACCATCTTCCCTTGATAATGGATAGAGGTTTCATTGGGGTATTGCACGATTGGTGCGAGGCCTTTCCAACATACCCTAGATCATATGATTTGGTGCATGCAGCAGGGCTTCTGTCCCTTGAAGCAAGTAAGAAGCCAAGGTGCTCCATGCTTGATTTATTCAGTGAGATTGATCGGTTACTTCGTCCAGAGAGTTGGGTGATAATCCGTGACATCGCCACGCTTATCGAATCGGCTCGAACTGTAACTACACAGCTTAAGTGGGACGCACGAGTGATAGAAATTGAAGACAACAACGACGAGAGAGCAGCTAAAGAAGACAAATGTCCTACCGTCGACTCGGGGAATACAGAAATACAGAGGTGGAAGCCTCCTGCACACGATACCATCAAACTCAATGTGGATGCAGCATGCCATCCAACAAATTCGACCACCGGATTTGGAATGGTCTTTCGTGACTGGAGCGGAAACCTCATAGTTGCAGCATCAGAGCCCTTTAATTACAAGCTTGACCCCTTCTCTGTCGAGGCAACAACTCTCCTTCAGGGGTTGAAGATGGTCGAACAATTAGCGATTAATCACATGTGGGTTGAGTCGGATTGTGAGCAGCTGGTGAAGATCATCCATGCGCATGGGTACCAACAATCTCCACAGGGAACTCTTCTAGATGAAATTCGAAGATGGATGATACATCTCCAAATCAGAGGCTTCAGCTTTGTCCCTCGAACAGCAAATAAAGTGGCCCATGTTTTAGCAACTAATTCTTTGAGCCTTAATATGGGCCAAAAATGGGGTAATGTAGGCCCAAGTTGGTTATCTACTACTGTGGATGCAGATAATTTGCATGGTAGCCATTGA 2580 43.6 MSRPLHRGAAGVKVHGHGDDKWDSQMKDKTEKEEVDRRVSSDHGGNLASRFPIRLLLPDNSPSKYGSTENGFASDSFLVGNSRSRHQFILLMLRLSLVLIIILALTGSFWWTLSISGSSQVQIFHGYRRLQEQLVSDLWDIGEISLGPSRLKELEFCSPELENYVPCFNSSDTQDDGYDRHCEPSSWENCLLQPPSKYKIPLRWPTGRDVIWVTNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREVGVRTILDIGCGYGSFGAHLFSKHLLTMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPYPSLSYDMVHCARCGVDWDSKDGKYLIEVDRVLKPGGYFVWTSPLTNTQGVLHKKEKQKRWNYIQDFVEYLCWEMLSQQDETVVWKKTSKSNCYSSRKPDSSPPICGKGHDIESPYYRPLQACIGGRKSRRWVPINERRTWPSRANLNKSELAVHGLAFDDFTEDSLNWKMAVKNYWSLLSPLIFSDHPKRPGDEDPLPPYNMLRNVLDMNAHFGGFNSALLEAGKSVWVMNVVPTDGPNHLPLIMDRGFIGVLHDWCEAFPTYPRSYDLVHAAGLLSLEASKKPRCSMLDLFSEIDRLLRPESWVIIRDIATLIESARTVTTQLKWDARVIEIEDNNDERAAKEDKCPTVDSGNTEIQRWKPPAHDTIKLNVDAACHPTNSTTGFGMVFRDWSGNLIVAASEPFNYKLDPFSVEATTLLQGLKMVEQLAINHMWVESDCEQLVKIIHAHGYQQSPQGTLLDEIRRWMIHLQIRGFSFVPRTANKVAHVLATNSLSLNMGQKWGNVGPSWLSTTVDADNLHGSH 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 102755178 102760685 - Tan0004559.1 Tan01g3792 741216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3792 859 Gene3D Vaccinia Virus protein VP39 249 423 IPR029063 -
Tan01g3792 859 CDD AdoMet_MTases 279 375 - -
Tan01g3792 859 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 165 675 IPR004159 GO:0008168(InterPro)
Tan01g3792 859 SUPERFAMILY Ribonuclease H-like 702 830 IPR012337 -
Tan01g3792 859 FunFam probable pectin methyltransferase QUA2 239 423 - -
Tan01g3792 859 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 499 649 IPR029063 -
Tan01g3792 859 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 197 402 IPR029063 -
Tan01g3792 859 Gene3D - 702 831 IPR036397 GO:0003676(InterPro)
Tan01g3792 859 MobiDBLite consensus disorder prediction 12 43 - -
Tan01g3792 859 MobiDBLite consensus disorder prediction 1 45 - -
Tan01g3792 859 CDD RNase_H_like 706 826 IPR044730 -
Tan01g3792 859 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 137 676 IPR004159 GO:0005737(PANTHER)|GO:0008168(InterPro)
Tan01g3792 859 Pfam Reverse transcriptase-like 707 827 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3792 K23870 - - csv:101212448 1297.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3792 Tan-Chr1:102755178 Tan11g0668 Tan-Chr11:5859277 2.20E-101 dispersed
Tan01g0280 Tan-Chr1:2350341 Tan01g3792 Tan-Chr1:102755178 1.30E-89 transposed
Tan02g2259 Tan-Chr2:91591751 Tan01g3792 Tan-Chr1:102755178 3.90E-153 transposed
Tan03g1287 Tan-Chr3:69139677 Tan01g3792 Tan-Chr1:102755178 4.70E-51 transposed
Tan04g1016 Tan-Chr4:9041783 Tan01g3792 Tan-Chr1:102755178 4.90E-186 transposed
Tan04g1146 Tan-Chr4:10648174 Tan01g3792 Tan-Chr1:102755178 3.50E-47 transposed
Tan04g1336 Tan-Chr4:14298284 Tan01g3792 Tan-Chr1:102755178 1.20E-82 transposed
Tan10g0576 Tan-Chr10:4685173 Tan01g3792 Tan-Chr1:102755178 7.70E-34 transposed
Tan01g3792 Tan-Chr1:102755178 Tan02g2399 Tan-Chr2:92566503 1.20E-272 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g417 . Blo12g00708 Bda01g00888 Bda03g00489 Bpe02g00111 Bpe04g00443 . Bma01g02610 Cmo05g00528 . Cma01g01610 Cma09g00561 Car01g01228 . . Cpe06g00427 . . . . . . . . . . . . . . . Cone4ag1332 Cone7ag1597 Cone17ag1213 Cone20ag0512 Lsi04g02238 Csa03g04449 Chy04g00251 . Blo17g00117 Blo18g00131 Bda11g00768 Bda13g01399 Bpe02g01124 Bpe14g00456 Bma01g01401 Bma02g00139 Sed14g0863 Cmo01g01656 Cmo09g00551 . . Car05g00451 Car09g00492 Cpe11g00441 Cpe02g00370 Bhi09g02441 Tan01g3792 Cmetu02g0320 . Hepe01g2131 . . Cla11g01386 Cam11g1443 Cec11g1469 Cco11g1465 Clacu11g1600 Cmu11g1419 Cre11g1839 Lsi08g00889 . . Cme04g00281
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002427 4 2 2 4 4 0 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 1 1 2 4 2 1 59