Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3820 ATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCACATTCCTCCGCTCTAAACAACAGCATCCGATCTTTCTCGCCCCTCTCTCATGCCCGCAAAATCCATCTTATTCTATCAATGGCGATATCAGTCTCTCTCTTTCTCGCTCGTCTTCCTCTCTTCTTTCTACTTCCCCCAGCCACAATCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAGGTTGATTTTTCAGTTCGCCTCAACCTCCCAAGACGAAGCAGTAGCGAGCTCTCCTTCTGACACTGAAGAGTTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATATGGTACTGTCCTGGACGTGGAGCTTTCAATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTAACAATGGGATCACCTGAGGAGGCTCTTGCAGCACTTAATAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTAAAGCTCAATTATGCTAAGCTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCGAAACCAGTTACTTTCAATTTGTTTGTGGCAAATTTGTCATTTGAAGCAAGAGCAAAGGATCTCAGGGAGTTCTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGATTTTCATGGGGAGAGCAGTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTGAAGAGAAATCCCAGTCTGAAGTTACATCAACTGATGGGGTGGAGCTAGCAAATGCTGGTGCTGAAGTTTAA 903 44.3 MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSHNPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKEKPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLPEEKSQSEVTSTDGVELANAGAEV 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103074173 103076159 - Tan0008118.1 Tan01g3820 741244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3820 300 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676(InterPro)
Tan01g3820 300 Pfam RNA recognition motif 195 265 IPR000504 GO:0003723(InterPro)
Tan01g3820 300 Pfam RNA recognition motif 105 171 IPR000504 GO:0003723(InterPro)
Tan01g3820 300 Gene3D - 181 282 IPR012677 -
Tan01g3820 300 SMART rrm1_1 194 268 IPR000504 GO:0003723(InterPro)
Tan01g3820 300 SMART rrm1_1 101 173 IPR000504 GO:0003723(InterPro)
Tan01g3820 300 SUPERFAMILY RNA-binding domain, RBD 87 183 IPR035979 GO:0003676(InterPro)
Tan01g3820 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723(InterPro)
Tan01g3820 300 PANTHER OS02G0815200 PROTEIN 65 270 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Tan01g3820 300 MobiDBLite consensus disorder prediction 279 300 - -
Tan01g3820 300 Gene3D - 69 180 IPR012677 -
Tan01g3820 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3820 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32