Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3845 ATGGCTTGCAAGTTCCTGTTTCCTCCATTAGTAGCTTCGTTTCTGATACTTTTAACCCTTTTCAGTTCTTCCTCTGCTGCAAATGATTCTCTCTTTTGCAACTTCACATCAAATCCTTCTTACTGCATCTCTGTGCTTCAAAAATCAACAGGCAATGTCTTCGATTCAGGTCGGTTTTCGATGCGTCGGTCATTATCTAAAGCATCTAGATTCTTAGACTTGATTGAGAAGCATCTTCATAACAGTTCAACTCTACCAAAATCCGTGGCTGGAGCTCTTACAGATTGCCAGTATCTAGCCCAACTAAACATCAATTTCTTGTCTAACTCATTTCGAGCCATCAATGGCACTGATAAAAAGCTTACTTTCTCAAAAGCTGATTATGTTCAGAGTCTTCTTAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGCCTAAAAACCGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTGTTAGCTCCACTTATTGACTGTACCAAATCTTATAGTCTTTCTCTTGATCTTTTTACAAAGGGCTGGGTGCCTAGGAATAGGAACAGAACACTTGAACACCCTGTGAAAAAACACCTCCAGTTTAGGAAAGGACCGTTGCCATTGAGAATGTCGAGACACGACCGTGCCGTTTATAATTCGATGGTACAGGAAACTTCCTTACCATCACAGAAGCTGTTAATGCAGCTCCAAACAATTCTCTCTGCTGCTAATGGCTACTTCTTGATTTACATCATGGCTGGTGTTTATCAAGAATATGTGTCAATCCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCGTTACCGGCAACCGGAGCGTCGCCGATGGCTGGACGACGTTCAACAGTGCAACTTTTGCTGTGGCAGCCGAAGGATTCATGGCAGTGAACATAACCTTCCAAAACAGAGCTGGAGCAATCAAAGGCCAAGCAGTTGCAGTAAGAAGCGGGGCCGATATGTCCATCTTCTACAGCTGCAGCTTTGAGGGCTATCAAGACACCTTATACACTCACTCCCTCAGACAATTCTTTAGAGAATGTGACATTTATGGCACAGTGGATTTCATCTTTGGAAATGCAGCTGTTGTATTCCAAAACTGCAACATATATCCCCGGCTACCGCGTCCCGGTCAGAGCAACATGATCACGGCTCAAGGTCGATCGGACCCGAACCAAAACACCGGGACTTCGATTCACAACTGCACGATTCGAGCCACGAGCGATTTGGCTGCAAGCAACAGTTACATGAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTTTATATGCAGACATTCATTGATGGGTTTATAAATTCTGCTGGTTGGGATCCATGGTCAGGGGAATATTTGAGCACATTGTATTATGGAGAGTATAATAATACAGGAGCTGGATCAAATATAAAGAACAGAGTTACTTGGCCTGGTTATCATGTGATTTATAATGTTACTAATGCTGTTAATTTTACAGTTTCAAATTTACTGTTTGGGGATGTATGGTTGCCTCCAAGTGATGTGCCTTATACTGGAGGTTTCATGTAA 1593 42.25 MACKFLFPPLVASFLILLTLFSSSSAANDSLFCNFTSNPSYCISVLQKSTGNVFDSGRFSMRRSLSKASRFLDLIEKHLHNSSTLPKSVAGALTDCQYLAQLNINFLSNSFRAINGTDKKLTFSKADYVQSLLSAILTNIDTCLDGLKTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRNRNRTLEHPVKKHLQFRKGPLPLRMSRHDRAVYNSMVQETSLPSQKLLMQLQTILSAANGYFLIYIMAGVYQEYVSIPSKKKYLLMIGDGINQTIVTGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNRAGAIKGQAVAVRSGADMSIFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQSNMITAQGRSDPNQNTGTSIHNCTIRATSDLAASNSYMNKTYLGRPWKQYSRTVYMQTFIDGFINSAGWDPWSGEYLSTLYYGEYNNTGAGSNIKNRVTWPGYHVIYNVTNAVNFTVSNLLFGDVWLPPSDVPYTGGFM 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103212726 103215496 - Tan0005332.1 Tan01g3845 741269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3845 530 PANTHER PECTINESTERASE 16 520 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan01g3845 530 FunFam Pectinesterase 223 529 - -
Tan01g3845 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 180 IPR035513 -
Tan01g3845 530 SMART PMEI_2 22 177 IPR006501 GO:0004857(InterPro)
Tan01g3845 530 Pfam Pectinesterase 237 514 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan01g3845 530 CDD PMEI-like_3 31 182 - -
Tan01g3845 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Tan01g3845 530 SUPERFAMILY Pectin lyase-like 242 527 IPR011050 -
Tan01g3845 530 ProSitePatterns Pectinesterase signature 2. 362 371 IPR033131 -
Tan01g3845 530 Gene3D - 236 529 IPR012334 -
Tan01g3845 530 Pfam Plant invertase/pectin methylesterase inhibitor 32 176 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3845 Tan-Chr1:103212726 Tan07g0985 Tan-Chr7:23190646 2.50E-132 dispersed
Tan01g3845 Tan-Chr1:103212726 Tan06g0778 Tan-Chr6:6097598 3.90E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3845 K01051 - csv:101205879 899.427