Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3849 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCTCAACCTTTTCCCCGCTCCTTTTCCGTCGCCGCCACTCCACCGCCGCGCGATTCTTCTGCCGTTGCCGATGACGATTCCGCCGCTGGCCCCTCGCCTCTCACTCACGCCATGCTCCCCAAAGAACCGGCCTCCGGCGGCAACGGAGATTCCATCGAAGTCGTCCGCCGCCCCCGCGGCCGGCCTCCGGGATCGAAGAACAAACCGAAGCCGACAGCTATCGTCGTCGCCGCCCGCGACGCCGAGCGGGCGATGAGTCCTTACGTGCTCGAAGTTCCCGGTGGTAGCGATATCGTCGAGGCTATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCTGACGTCACTCTCCGACAGCCGTCCTCCACTCCGGTGGCAAACGTCACTTTCCATGGACGATTCGATATCCTGTCCGTCTGCGCCACTTTCGTTCCTCATACGACGTCGTTTCCGGTCCCTAACGGATTCACCATCACGCTAGCGGGGCCGCAGGGCCAGATCTTCGGCGGCTTGGTCGCCGGAGCTTTAATCGGCGCCGGAATCGTCTATGTAATAGCCGCCTCATTCAACAATCCATCGTATCAACGGTTACCATCAGAGGACGAGGTCAGAAAATTAACCTTCAGCGACGTCGAAGAAGTCCACTCTCCACCGATCTCCGGCGGCAAAGATAGTGAAAACACCGCCGCCGCCGCCGCCGCCGATACTTGCGGCCTGCTGCCGATGTACAGCACTCACTCATCCTCCGACGTAATATGGACTCCCGCCGCTAGACAGCCGCCGGCGCCGCCGCACCACCGCCAGTACTAA 876 60.96 MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSSAVADDDSAAGPSPLTHAMLPKEPASGGNGDSIEVVRRPRGRPPGSKNKPKPTAIVVAARDAERAMSPYVLEVPGGSDIVEAISRFCRRRNTGLCILNAYGTVADVTLRQPSSTPVANVTFHGRFDILSVCATFVPHTTSFPVPNGFTITLAGPQGQIFGGLVAGALIGAGIVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEVHSPPISGGKDSENTAAAAAADTCGLLPMYSTHSSSDVIWTPAARQPPAPPHHRQY 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103244139 103245200 - Tan0021051.1 Tan01g3849 741273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3849 291 CDD DUF296 99 211 IPR005175 -
Tan01g3849 291 MobiDBLite consensus disorder prediction 1 85 - -
Tan01g3849 291 FunFam AT-hook motif nuclear-localized protein 98 229 - -
Tan01g3849 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Tan01g3849 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 55 245 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g3849 291 MobiDBLite consensus disorder prediction 1 16 - -
Tan01g3849 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Tan01g3849 291 Gene3D - 98 237 - -
Tan01g3849 291 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3849 Tan-Chr1:103244139 Tan07g1754 Tan-Chr7:69092337 5.20E-39 dispersed
Tan01g3849 Tan-Chr1:103244139 Tan02g2485 Tan-Chr2:93448395 7.90E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3849 - - - 0.0