Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3858 ATGCCGCATAGAACGACTTACTTCTTCCCGAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACTTCCAAACAGATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTAACGAAAGCGACGCGAAACCGACCCCGCGGCCTGCTCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAATAAGAAACTGCCTGCTTTTTACGACTGGTTGGTGGACAAGAAAGCAACGCGATCAGCATCCGCTCACGTGAAAACTTGGCTTTCCAATTGCGATGAGGACCGCGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGACCATGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGCGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACTGTGGATGGAAATTTTTCCAGTGATGTCAAGGATTCCTCGGCGTCAAAGATCTTGTCCACGCGCACGGCGAGGCCGGAAGAGATTGAGGTTGGAGATGCTAAGGAAAGCCTAGCTCAGAGAGCGAAAGAGAGTTATTACCTGCAACTCGCTTTGGCTGCAACGCTTCGTTCCCATGCTAGTCTCGCTGGCGATCCTGTGCTTATGGAGGAAGGCAGGGTGGAAATTACGGACGCTGAGACTGTTTCTTATCGACTTTGGGTGAGTGGTTGCCTGTCTTACTCCGACAAAATATCAGATGGTTTCTACAATATTTTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTGCCACCTCTGATGTCGCTTAAAACCATTGAACCAAGTGAGACGTCAATGGAGGTGGTTCTTGTGGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCGCAAGAACTATATTGTGCTTCAGAAAACACCTTAGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCGATCTACATGGGGGGGACTTTCCCGGTGGAGCAAGGGGGTTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAACTGCATTGTGTTACCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGAATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCACTCCACATTTCTCATTTAAAAGAGTTCCAAGAACCTTACGTGGAAAGTTGTTTAAGCCGTCAAACTGTTGGGTCAAAGCAAACCTGTGGTTTTCCTGAAAATCCTCTACATTCAGGTTTTGGAGAGCACCAGATGAAAGGGGGAAGCACATTACATAAAAATTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCATCTCACCTGTGTTTGGAAACTAAAGTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGTCATCCACTGACGCTGATGGCTCTGGAGTGTTGGGTTCTGTTTCTGGTGCATCTGTACATGAAAACAAAGTTGTCATTGAAGAAATATACAGAAAAGAGGCAGTTGTGGCGGGAATTTCACTCTGTGAAACTAGTATTAACCCGTCCAAATTAAGCTTGTCAACTCAAACTGATTCAAAAGAGGTTGAGGGCAGGTCTCAAAATTGTTCAGCATCAACATATCCAAGATATCTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCATTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCGTGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCGATAATGAAGCGGGTCCGCCATCCGAACGTGGTTCTCTTCATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCTAGGGGTAGTCTATACCGCCTCATTCACAGGCCATCATCTGGTGAATTAATGGATCAAAGGAAACGATTGCGAATGGCGTTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTTAATCCTCCTATAGTACACTGGGATCTCAAATCTCCCAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGACTTTGGATTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCGAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTTGGCCCGGCTCAGGTCGTGGGGGCAGTCGCTTTCCAGAATAGAAGGCTTTCTATCCCATCAAGCACTTCCCCGTTGTTGGCCTCCCTCATTGAATCTTGCTGGGCAGATGATCCAATTCAGCGCCCATCCTTTGCAAGCATAGTTGAGTCCCTAAAGAAATTGCTCAAATCTCCACAGCAGTTAATAGCAATGGGTGGAACGTGA 2778 46.33 MPHRTTYFFPRQFPDRGFDSASTSKQILDHEKKINKDTFSNESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSASAHVKTWLSNCDEDRELLLPPPTSEPDHDTTSVKDRSVDRNFDRQVSLPRVSSASSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSTRTARPEEIEVGDAKESLAQRAKESYYLQLALAATLRSHASLAGDPVLMEEGRVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLKTIEPSETSMEVVLVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQNCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESCLSRQTVGSKQTCGFPENPLHSGFGEHQMKGGSTLHKNSGAETDKLVDQACMGMRSSHLCLETKVSKECVLQSHIMSSTDADGSGVLGSVSGASVHENKVVIEEIYRKEAVVAGISLCETSINPSKLSLSTQTDSKEVEGRSQNCSASTYPRYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSSTSPLLASLIESCWADDPIQRPSFASIVESLKKLLKSPQQLIAMGGT 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103353479 103362647 - Tan0003816.1 Tan01g3858 741282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3858 925 PANTHER SERINE-THREONINE PROTEIN KINASE 222 913 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Tan01g3858 925 Pfam Protein tyrosine and serine/threonine kinase 655 909 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 SUPERFAMILY Protein kinase-like (PK-like) 629 908 IPR011009 -
Tan01g3858 925 CDD STKc_MAP3K-like 661 909 - -
Tan01g3858 925 ProSitePatterns Protein kinases ATP-binding region signature. 661 682 IPR017441 GO:0005524(InterPro)
Tan01g3858 925 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Tan01g3858 925 SMART serkin_6 655 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 FunFam Serine/threonine-protein kinase CTR1 734 919 - -
Tan01g3858 925 MobiDBLite consensus disorder prediction 20 57 - -
Tan01g3858 925 PRINTS Tyrosine kinase catalytic domain signature 729 742 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 PRINTS Tyrosine kinase catalytic domain signature 770 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 PRINTS Tyrosine kinase catalytic domain signature 880 902 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 PRINTS Tyrosine kinase catalytic domain signature 836 858 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 ProSiteProfiles Protein kinase domain profile. 655 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 Gene3D Transferase(Phosphotransferase) domain 1 734 921 - -
Tan01g3858 925 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Tan01g3858 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3858 925 MobiDBLite consensus disorder prediction 25 40 - -
Tan01g3858 925 FunFam Serine/threonine-protein kinase isoform 1 645 733 - -
Tan01g3858 925 MobiDBLite consensus disorder prediction 109 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3858 Tan-Chr1:103353479 Tan08g1775 Tan-Chr8:69733366 3.40E-177 dispersed
Tan01g3858 Tan-Chr1:103353479 Tan08g1774 Tan-Chr8:69733366 3.40E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67106 PF07714 PK_Tyr_Ser-Thr 2.90E-64 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3858 - - - 0.0