Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3867 ATGGCGAATGAGATACTCCAATTGGATATTCAGGATCATCATGTTGTTATGGACAATGGCATATTGCAAGTGACACTGTCCAAACCATATGGAAATGTTACTGGGATAAAATACAACGGTATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCCCATAGAGGATACTGGGATCTTGTGTGGAACTCTGGGACTCCAGGAACAACGGGAACATTCGATGAGATGAGAGGAAAAGAATTTGTAGTGATCATACAAAATGAGGAACAGATAGAGCTCTCATTTAAAAGGGATTATTCATTCAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCCTATGCCATCTATGAGCACTTGAAGGAATGGCCACCATTCAACCTTCCTCAAACTAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCCATAGCAGATAATAGAAAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGCAAACCTTTGGACTTTCCAGAGGCTGTATCGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTTCATGGATGGATATCCATGGATCCTCCAGTGGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCTCTCAAACAGAACCTTACCTCTCATGTGGGACCGTATGCTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAATCCTGATGAGCCATGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGACCCCCTTTCTTTGTGGGAAGATGCTAAATCTCAGACGATGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTGAGAATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATCTGTTCTTGACAGATATGTTAATCAAGAGCAAATGCCAGCGACTGACGCGTACGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAGACTGAAAACAAGGGCTACCAGTTTTGGACAAAAACAGATGCAGATGGCTCATTTAGCATTGAAAATATACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGTTTCATGGGCGATTACCGTTATGATGTTGTCGTTAGCGTCTATGCAGGTAGTGATATGGACGTGGGTGATCTTGTTTATGAGCCGCCTAGGAATGGGCCCACGTTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTATATTAACAAAATGTATGTCGATCATCCAGATAGATTTAGGCAATATGGATTGTGGGCAAAATATGGAGAGTTATATCCTGATGCAGACTTAGTATATACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTACTAGAACGAGAAATGATGGATCCCATCAAGCAACCACGTGGGAAATCAAGTTTACACTTGATAATAATATAGATACGAGTGGCAGCTATACATTGCGAGTGGCTCTCGCCACTGCCAACGTTGCTGAATTACAGATTCAGGTAAACAATCCAGAAGCAAAGCCTGTTCTATTTACCACAGGACAGATTGGACACGACAATACAATAGCTAGACATGGAATTCATGGACTCTATCGACTCTACAGTGTTGACATATCAGGATCTCTATTAGTGGAAGGAGAGAACTCCATCTTCCTTTCGCAAATTATAAGAAGTTCAGCTTTCAATGGAGTCATGTATGATTATATCCGCCTCGAAGGTCCTCCATCCGATGCCCCTACAGATTCATAA 1923 42.17 MANEILQLDIQDHHVVMDNGILQVTLSKPYGNVTGIKYNGIDNVLEVDDKEAHRGYWDLVWNSGTPGTTGTFDEMRGKEFVVIIQNEEQIELSFKRDYSFKDKEVPLNIDKRFIMLRNSSGFYSYAIYEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRKRFMPLPEDRLRHRGKPLDFPEAVSLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKLNPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKSQTMKEVQSWPYSFPASENFPPPNQRGRLTGKLSVLDRYVNQEQMPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFSIENIRIGDYNLYAWVPGFMGDYRYDVVVSVYAGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKMYVDHPDRFRQYGLWAKYGELYPDADLVYTVGVSDYTKDWFFAHVTRTRNDGSHQATTWEIKFTLDNNIDTSGSYTLRVALATANVAELQIQVNNPEAKPVLFTTGQIGHDNTIARHGIHGLYRLYSVDISGSLLVEGENSIFLSQIIRSSAFNGVMYDYIRLEGPPSDAPTDS 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103533285 103540075 - Tan0018060.1 Tan01g3867 741291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3867 640 CDD RGL4_M 331 430 IPR029413 -
Tan01g3867 640 Gene3D - 7 274 IPR014718 GO:0030246(InterPro)
Tan01g3867 640 SUPERFAMILY Starch-binding domain-like 328 421 IPR013784 GO:0030246(InterPro)
Tan01g3867 640 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Tan01g3867 640 Pfam Polysaccharide lyase family 4, domain III 440 629 IPR029411 -
Tan01g3867 640 FunFam Rhamnogalacturonate lyase B 328 427 - -
Tan01g3867 640 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Tan01g3867 640 CDD RGL4_N 14 301 - -
Tan01g3867 640 SUPERFAMILY Galactose-binding domain-like 437 630 IPR008979 -
Tan01g3867 640 Gene3D - 328 427 - -
Tan01g3867 640 Gene3D - 438 630 - -
Tan01g3867 640 Pfam Polysaccharide lyase family 4, domain II 355 425 IPR029413 -
Tan01g3867 640 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 633 IPR051850 -
Tan01g3867 640 CDD RGL4_C 442 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3867 Tan-Chr1:103533285 Tan01g3869 Tan-Chr1:103555986 1.30E-268 dispersed
Tan01g3867 Tan-Chr1:103533285 Tan01g3868 Tan-Chr1:103541361 1.30E-247 tandem
Tan01g3867 Tan-Chr1:103533285 Tan02g2451 Tan-Chr2:93136837 8.10E-263 wgd
Tan01g3867 Tan-Chr1:103533285 Tan03g1764 Tan-Chr3:73473345 1.10E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3867 K18195 - csv:101204193 1226.85