Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3868 ATGAAAAAAAGTACATTTTTTCCCTCAATTTTGTCTGAGACCCTCAAATTATTTTGCCTCTTTTCTTCTTTTTTCTTTTACTTTCATGCACCCTTCATCTCTGCAACACCAACAGTACAACATCACATTTTCTCAACGACCAACGCCGATGGACACCGCTCCGATGCCTCGGAGTCTCTGCTGCAACTCCACATTCGAAAACAATACGTTGTGATGAACAATGGGATAATTGGGGTCACGCTGTCGAATCCAAAGGGAATGGTCACTGGAATACAGTACAATGGGATTGAAAACTTGCTTGAGGCTGTCAATGCTGAAGATGATAGAGGGTATTGGGACATTGTTTGGAATGTCGCAGGAAGTTCAGGAACAAAAGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTACAAAATGACGAACAGATAGAACTCTCATTCAGCAGAACTTACAATTCATCCACCGGAGGCAACCTAATTCCCTTGAATATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTCGAAAGAATGGCCAGCGTTTATCATCGACAACACCAGGATCGTATTCAAGCCCCGAAAAGACAAGTTTCGGTTCATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTGCCCGATGATCGGAAGCCACCGCGAGGAAAAGTCCTAGCTTATCCAGAGGCCGTCCTCCTCCTTGATCCTGTAGAGCCCGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGGTGCGAAAGCAAGGACGCTGGGGTTCACGGGTGGATATCCACCGAACCGTCCATTGGCCTTTGGCAAATCGCACCCAGCAACGAGTTTCGCTCCGGTGGGCCCCCAAACAGTTTCTCACGTCCCATGTCGGTTTTTCATAGCGCTCATTACGCCGGAGAGGATATGGTGATAAAGTTCGTAAGTAATGAGCCTTGGAAGAAGGTTTTCGGTCCTATCTTTATGTATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTTTGGCAAAATGCTAAAGAACAGATGACGGCTGAAGTTCAAAGCTGGCCTTACAGTTTCCCTGCTTCGGAGGATTTTCTCAAATCTGATCAACGAGGCACTGTCAGCGGCAGATTGATGATCCGTGAGAGATATGTGAGTGATGAATCCCTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCCTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATGAGAATGGACATTTCTCTTTGAAGAATGTTCAAAGTGGAAATTATAGTATTTATGGATGGGTCCCTAATTTTATTGGCAATTACCAATACAATGCTTTCATCAGTGTAACCCCAGGCAGTGATATCAATGTGAGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTATGGGAAATAGGCATTCCTGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTCAGGCAGTATGGATTATGGGAAAGATACACAGAATTATATCCTAACGAGGATCTAGTTTATACAGTTGGCCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTGACCAGGAAGATAGGGGACAACAAATATGCAGGAACTACTTGGAAAATTAAGTTCCATCTTGACAGTCCAGATACACATGGAACATATAGGCTACGTCTTGCATTGGCCACTGCAAATGCTGCAGAATTACAAGTTCGTCTGAATGATGCACAAACACTTCCCCCATTATTTACAACTGGATTGATTGGAAAGGACAACACTATAGCTAGACATGGAATTCATGGTCTCTATCGGCTGTACACTGTTGACATTCCGGGCGGTGAACTTGTGGCGGGAAACAATACAATTCTTCTTACACAAACAAGTAGCAACGGTCCTTTTGTCGGGATAATGTATGATTATCTTCGTTTAGAAGGACCCTTAACTTCCAAAATGTAA 2067 43.54 MKKSTFFPSILSETLKLFCLFSSFFFYFHAPFISATPTVQHHIFSTTNADGHRSDASESLLQLHIRKQYVVMNNGIIGVTLSNPKGMVTGIQYNGIENLLEAVNAEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVQNDEQIELSFSRTYNSSTGGNLIPLNIDKRFVMLRNSSGFYSYAIYEHSKEWPAFIIDNTRIVFKPRKDKFRFMAVADKRQRFMPLPDDRKPPRGKVLAYPEAVLLLDPVEPEFKGEVDDKYQYGCESKDAGVHGWISTEPSIGLWQIAPSNEFRSGGPPNSFSRPMSVFHSAHYAGEDMVIKFVSNEPWKKVFGPIFMYLNSLPEGEDPLRLWQNAKEQMTAEVQSWPYSFPASEDFLKSDQRGTVSGRLMIRERYVSDESLPASGAYVGLALPGELGSWQTESKGYQFWTRADENGHFSLKNVQSGNYSIYGWVPNFIGNYQYNAFISVTPGSDINVSELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYTELYPNEDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFHLDSPDTHGTYRLRLALATANAAELQVRLNDAQTLPPLFTTGLIGKDNTIARHGIHGLYRLYTVDIPGGELVAGNNTILLTQTSSNGPFVGIMYDYLRLEGPLTSKM 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103541361 103550344 - Tan0013855.1 Tan01g3868 741292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3868 688 FunFam Rhamnogalacturonate lyase B 380 479 - -
Tan01g3868 688 SUPERFAMILY Galactose-binding domain-like 489 681 IPR008979 -
Tan01g3868 688 Coils Coil 596 616 - -
Tan01g3868 688 CDD RGL4_C 494 681 - -
Tan01g3868 688 Gene3D - 490 681 - -
Tan01g3868 688 Pfam Polysaccharide lyase family 4, domain III 492 680 IPR029411 -
Tan01g3868 688 Gene3D - 380 480 - -
Tan01g3868 688 SUPERFAMILY Starch-binding domain-like 380 480 IPR013784 GO:0030246(InterPro)
Tan01g3868 688 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Tan01g3868 688 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 683 IPR051850 -
Tan01g3868 688 CDD RGL4_M 383 482 IPR029413 -
Tan01g3868 688 CDD RGL4_N 69 343 - -
Tan01g3868 688 Pfam Rhamnogalacturonate lyase family 54 258 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3868 Tan-Chr1:103541361 Tan02g2451 Tan-Chr2:93136837 3.30E-254 dispersed
Tan01g3867 Tan-Chr1:103533285 Tan01g3868 Tan-Chr1:103541361 1.30E-247 tandem
Tan01g3868 Tan-Chr1:103541361 Tan01g3869 Tan-Chr1:103555986 4.40E-254 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3868 K18195 - csv:101203789 1111.29