Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3869 ATGTCATCTAGGGGAGTGCAATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGAAGCAAGGGAGTATTTGACGTGATTAAAGGATCAAATTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTATGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTTGTTCCTTTGAATATCGATAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTTTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACCAGAATCACTTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAACAGACAGAGATTGATGCCCCTGCCCGATGATCGGTTAAGTGGAAGATGCCAAACTTTGGCCTACCCCGAAGCTGTCCTGCTTACTGATCCTAAGAATCCTCAACTCAAGGGTGAGGTTGATGACAAATATCAATACTCGTGTGAAAACAAAGACTTGAAAGTCCATGGATGGATAAGCACCAATCCACCCATCGGGTTTTGGCAGATTACTCCCAGTGATGAATTTCGGTCAGGCGGGCCACATAAGCAAAGTCTAACCTCCCACGTTGGACCTACAACCCTTGCTATATTTTTGAGTGCTCATTATGCAGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCTACCTCAGCTGGGGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGACAGAAGCCCAAAGTTGGCCGTATAGTTTCCCTTCATCTGAGGATTACCCGAAAGTGGATCAACGGGGTACTGTTAGCGGTAGGCTACTGGTTTTTGACAGGTATATGAGTCGAGACTATCTTCCAGCCAGTGGAGCCTTCGTCGGATTGTCAGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCAACTATAATCTATATGCATGGGTCCCTGGTTTCATTGGAGATTACCGTTGCGATGCCCTCGTTAACGTAAACCAAGGATCTTGCATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCTACAATATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAATCCAATGCATATTAATAAGCTCTTTGTAAACCATCCCGACAGGTTTCGGCAGTACGGGTTGTGGGACAGATATGCTGAATTATACCCCGACGAGGATTTAGTATACACGGTTGGCGCAAGTGATTATAGTAAAGACTGGTTCTTTGCTCAGGTCCCAAGGAAGACAAACAATAATTCACATCAAGGAACAACTTGGCAAATCAAATTCAAACTCGATAGAGTGGATCACAAGAGTATGTATACGTTACGAGTCGCGATTGCATCAGCAACTCTGGCTGAATTGCAGGTCCGGGTTAACGATCCGAGATCGAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTCTCATCTTGTTGAAGGAGATAACACAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTTCAACAAAGTGA 1905 43.78 MSSRGVQLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGVFDVIKGSNFRVIVENEEQVELSFMRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLAYPEAVLLTDPKNPQLKGEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSAGDDPFWLWEDAKIQMMTEAQSWPYSFPSSEDYPKVDQRGTVSGRLLVFDRYMSRDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGNYNLYAWVPGFIGDYRCDALVNVNQGSCIEMGDLVYEPPRDGPTIWEIGIPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGASDYSKDWFFAQVPRKTNNNSHQGTTWQIKFKLDRVDHKSMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGSHLVEGDNTIFLTQPRCTSPFQGIMYDYIRLEGPSTK 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103555986 103566005 - Tan0008279.1 Tan01g3869 741293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3869 634 CDD RGL4_M 331 430 IPR029413 -
Tan01g3869 634 SUPERFAMILY Galactose mutarotase-like 12 296 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Tan01g3869 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 632 IPR051850 -
Tan01g3869 634 CDD RGL4_N 14 297 - -
Tan01g3869 634 CDD RGL4_C 442 629 - -
Tan01g3869 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Tan01g3869 634 Gene3D - 329 425 - -
Tan01g3869 634 Gene3D - 438 629 - -
Tan01g3869 634 Gene3D - 6 305 IPR014718 GO:0030246(InterPro)
Tan01g3869 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Tan01g3869 634 SUPERFAMILY Starch-binding domain-like 328 423 IPR013784 GO:0030246(InterPro)
Tan01g3869 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Tan01g3869 634 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Tan01g3869 634 Pfam Rhamnogalacturonate lyase family 4 200 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1463 Tan-Chr1:14826805 Tan01g3869 Tan-Chr1:103555986 6.20E-229 dispersed
Tan01g3867 Tan-Chr1:103533285 Tan01g3869 Tan-Chr1:103555986 1.30E-268 dispersed
Tan01g3869 Tan-Chr1:103555986 Tan02g2451 Tan-Chr2:93136837 1.20E-290 dispersed
Tan01g3868 Tan-Chr1:103541361 Tan01g3869 Tan-Chr1:103555986 4.40E-254 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3869 K18195 - csv:101203947 1252.65