Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3872 ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGGAGGAGCGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGCATGAAAACTCTAATAGAACGATATAACAAGACAAAAGAGGATCACCATCAGCTTGGGGTTTCAAATTCTGAAGTCAAGCACTGGCAAAGGGAAGCAGCAATGTTACGTCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAGATGATGGGTGAAGAGCTGACTGGGCTGAGCGTCAAAGATCTTCAGAATCTAGAAAATCAACTGGAGATAAGTCTCCGTGGTGTCCGTATGAAGAAGGATCAAATCTTAATGGATGAGATACAAGACCTAAACAGAAAGGGAAACCTAATTCACCAAGACAATATGGAACTTTATAAGAAGGTAAATCTAATTCATCAAGAAAACCTGGAATTACACAAAAAGGTCTATGGAACGAAGGATGCCAATGGAGCACATATAAGCAGTCTTACAAACGGACTGGGTATTGGAGAGGATGCAGGTATACCTATCAACCTTCAACTCAGCCAGCCACAGCAACAAGGCCATGAGGCACCGGAAAGAGCTACAAAACTGGGTCACTATTCCAATCTTGTTCTTTTGATGGTTGCAGCAGACTACAACTACGCTAGCAAAAAGAGACCTTACACCAACCAGGAAGATGTTTCTTATTTTTCATCAAGAAAATGGTGTAAGGTTGCAAACTATCTTTCAATCAGCGAAATGTGGTAG 855 43.39 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEDHHQLGVSNSEVKHWQREAAMLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQDLNRKGNLIHQDNMELYKKVNLIHQENLELHKKVYGTKDANGAHISSLTNGLGIGEDAGIPINLQLSQPQQQGHEAPERATKLGHYSNLVLLMVAADYNYASKKRPYTNQEDVSYFSSRKWCKVANYLSISEMW 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103600486 103621350 + Tan0005939.1 Tan01g3872 741296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3872 284 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Tan01g3872 284 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g3872 284 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g3872 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 Coils Coil 86 113 - -
Tan01g3872 284 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan01g3872 284 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g3872 284 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g3872 284 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0560 Tan-Chr1:5279281 Tan01g3872 Tan-Chr1:103600486 6.50E-59 dispersed
Tan01g0561 Tan-Chr1:5283735 Tan01g3872 Tan-Chr1:103600486 5.70E-27 dispersed
Tan01g3872 Tan-Chr1:103600486 Tan03g2620 Tan-Chr3:79270654 4.70E-37 dispersed
Tan05g2432 Tan-Chr5:75465033 Tan01g3872 Tan-Chr1:103600486 1.00E-12 dispersed
Tan04g2386 Tan-Chr4:82651246 Tan01g3872 Tan-Chr1:103600486 3.60E-33 transposed
Tan01g3872 Tan-Chr1:103600486 Tan03g1763 Tan-Chr3:73460082 1.40E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26523 PF01486 K-box 2.10E-26 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3872 K09264 - csv:101203545 430.639