Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3882 ATGGAGTTGAATGAACACTATTTGTTAGATGAACTTTTAGCTTTGAGAAGAGAAATGAATTGGGAATTAGCAATGCCCACAGAAATGAACGAGCTAATTTCCAGTGCAAATGGCTGGAATTTTGATTGCTCTGATTCGTCTTCTTTAGCCTTCTCTTTACCAATTGATCAGCAGAATTTTAATTATCTTCTCAGTGGGCAAGGGCAGTATTCTTTTCCCGGCGACCAATTCACGGCGACGGCGAGTACCGGCGATTCGATGTCGTACAGTACGTTGGAGACTACGCCGAGTAGTTTCGAGGTTTATAATGGGGAGTATCCGATTACGAATATGGAAGAGGAAGAACTTGGGATTTTGGAGGATGAGATTCACAATCTTGAAGTTCAGGCCAGTTGTAAAATCGAGCCGGTTCATTCTCCTGAAATTATCCCGGTTTTTAACACGGGCGGCACGTGCGATCTTGGGCAAAAAATCGTCGGTTCGTCGACTAAGAAACTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGGCTCAACGATCGGCTCTCCATGCTCAGATCCATCGTCCCCAAAATTAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCAATTGATTACGTGAAGGAACTGCTAGAGAAAATCAACAATTTGCAAAAGGAAATTGAAGTGGGGAATCCGAGTAAATTGGAGTCGATGGGCATTTTGAGAGATGTGAAACCGAATGAATATTTGGTCAGAAATTCGCCTAAGTTTAATGTGGAAAGAAGAGAAGGTGATACTCGGATTGAGATTTGCTGTGCGGCTAAGCCTGGATTATTGTTGTCGACTGTGGACACTCTTGAAGCTTTGGGGCTTGAGATTCAGCAGTGTGTCATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAACGGAGCACAGAACAATTGTGAGCACAGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGATATGGAGGAAGATGCCTGTAG 1026 44.15 MELNEHYLLDELLALRREMNWELAMPTEMNELISSANGWNFDCSDSSSLAFSLPIDQQNFNYLLSGQGQYSFPGDQFTATASTGDSMSYSTLETTPSSFEVYNGEYPITNMEEEELGILEDEIHNLEVQASCKIEPVHSPEIIPVFNTGGTCDLGQKIVGSSTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKINNLQKEIEVGNPSKLESMGILRDVKPNEYLVRNSPKFNVERREGDTRIEICCAAKPGLLLSTVDTLEALGLEIQQCVISCFNDFAIQASCSEGTEHRTIVSTEEVKQALFENAGYGGRCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103768169 103770340 + Tan0011889.1 Tan01g3882 741306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3882 341 Coils Coil 207 227 - -
Tan01g3882 341 CDD ACT_UUR-ACR-like 267 330 - -
Tan01g3882 341 Gene3D - 162 232 IPR036638 GO:0046983(InterPro)
Tan01g3882 341 Pfam Plant bHLH transcription factor, ACT-like domain 259 330 IPR054502 -
Tan01g3882 341 Pfam Helix-loop-helix DNA-binding domain 175 217 IPR011598 GO:0046983(InterPro)
Tan01g3882 341 Coils Coil 109 129 - -
Tan01g3882 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983(InterPro)
Tan01g3882 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 157 336 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan01g3882 341 SMART finulus 174 223 IPR011598 GO:0046983(InterPro)
Tan01g3882 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 233 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3882 Tan-Chr1:103768169 Tan02g2508 Tan-Chr2:93674442 9.80E-90 dispersed
Tan01g3882 Tan-Chr1:103768169 Tan01g3883 Tan-Chr1:103768169 2.20E-142 tandem
Tan02g0669 Tan-Chr2:6211997 Tan01g3882 Tan-Chr1:103768169 5.70E-16 transposed
Tan05g3011 Tan-Chr5:82028499 Tan01g3882 Tan-Chr1:103768169 1.70E-35 transposed
Tan01g3882 Tan-Chr1:103768169 Tan03g1755 Tan-Chr3:73407400 7.80E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26524 PF00010 HLH 8.00E-10 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3882 - - - 0.0