Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g3882 | ATGGAGTTGAATGAACACTATTTGTTAGATGAACTTTTAGCTTTGAGAAGAGAAATGAATTGGGAATTAGCAATGCCCACAGAAATGAACGAGCTAATTTCCAGTGCAAATGGCTGGAATTTTGATTGCTCTGATTCGTCTTCTTTAGCCTTCTCTTTACCAATTGATCAGCAGAATTTTAATTATCTTCTCAGTGGGCAAGGGCAGTATTCTTTTCCCGGCGACCAATTCACGGCGACGGCGAGTACCGGCGATTCGATGTCGTACAGTACGTTGGAGACTACGCCGAGTAGTTTCGAGGTTTATAATGGGGAGTATCCGATTACGAATATGGAAGAGGAAGAACTTGGGATTTTGGAGGATGAGATTCACAATCTTGAAGTTCAGGCCAGTTGTAAAATCGAGCCGGTTCATTCTCCTGAAATTATCCCGGTTTTTAACACGGGCGGCACGTGCGATCTTGGGCAAAAAATCGTCGGTTCGTCGACTAAGAAACTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGGCTCAACGATCGGCTCTCCATGCTCAGATCCATCGTCCCCAAAATTAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCAATTGATTACGTGAAGGAACTGCTAGAGAAAATCAACAATTTGCAAAAGGAAATTGAAGTGGGGAATCCGAGTAAATTGGAGTCGATGGGCATTTTGAGAGATGTGAAACCGAATGAATATTTGGTCAGAAATTCGCCTAAGTTTAATGTGGAAAGAAGAGAAGGTGATACTCGGATTGAGATTTGCTGTGCGGCTAAGCCTGGATTATTGTTGTCGACTGTGGACACTCTTGAAGCTTTGGGGCTTGAGATTCAGCAGTGTGTCATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAACGGAGCACAGAACAATTGTGAGCACAGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGATATGGAGGAAGATGCCTGTAG | 1026 | 44.15 | MELNEHYLLDELLALRREMNWELAMPTEMNELISSANGWNFDCSDSSSLAFSLPIDQQNFNYLLSGQGQYSFPGDQFTATASTGDSMSYSTLETTPSSFEVYNGEYPITNMEEEELGILEDEIHNLEVQASCKIEPVHSPEIIPVFNTGGTCDLGQKIVGSSTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKINNLQKEIEVGNPSKLESMGILRDVKPNEYLVRNSPKFNVERREGDTRIEICCAAKPGLLLSTVDTLEALGLEIQQCVISCFNDFAIQASCSEGTEHRTIVSTEEVKQALFENAGYGGRCL | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 103768169 | 103770340 | + | Tan0011889.1 | Tan01g3882 | 741306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g3882 | 341 | Coils | Coil | 207 | 227 | - | - | |
Tan01g3882 | 341 | CDD | ACT_UUR-ACR-like | 267 | 330 | - | - | |
Tan01g3882 | 341 | Gene3D | - | 162 | 232 | IPR036638 | GO:0046983(InterPro) | |
Tan01g3882 | 341 | Pfam | Plant bHLH transcription factor, ACT-like domain | 259 | 330 | IPR054502 | - | |
Tan01g3882 | 341 | Pfam | Helix-loop-helix DNA-binding domain | 175 | 217 | IPR011598 | GO:0046983(InterPro) | |
Tan01g3882 | 341 | Coils | Coil | 109 | 129 | - | - | |
Tan01g3882 | 341 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 168 | 217 | IPR011598 | GO:0046983(InterPro) | |
Tan01g3882 | 341 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 157 | 336 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Tan01g3882 | 341 | SMART | finulus | 174 | 223 | IPR011598 | GO:0046983(InterPro) | |
Tan01g3882 | 341 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 172 | 233 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g3882 | Tan-Chr1:103768169 | Tan02g2508 | Tan-Chr2:93674442 | 9.80E-90 | dispersed | |
Tan01g3882 | Tan-Chr1:103768169 | Tan01g3883 | Tan-Chr1:103768169 | 2.20E-142 | tandem | |
Tan02g0669 | Tan-Chr2:6211997 | Tan01g3882 | Tan-Chr1:103768169 | 5.70E-16 | transposed | |
Tan05g3011 | Tan-Chr5:82028499 | Tan01g3882 | Tan-Chr1:103768169 | 1.70E-35 | transposed | |
Tan01g3882 | Tan-Chr1:103768169 | Tan03g1755 | Tan-Chr3:73407400 | 7.80E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26524 | PF00010 | HLH | 8.00E-10 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g3882 | - | - | - | 0.0 |