Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3888 ATGTGGATGAGAATGTTGAAGTTTAAAGATAATGTTTTGGCAATTGCTATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACGTCTGATACAAATGATCCACAAAAAGCTATCTCAGAAGGAAATGGGAATGTTTTTAACATTTCATGGCTAGCTGGTGGTTTTTCTATTTTGGATCCAGTTGGGCTAATGTCGGAAGCTAGTAGGATGCTTGGTATTCTGTTGAATTTGTTGCAGACCGGTTCTGTTCCGGGTACATACACAGTAACAGTTGTCAGTAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTAACATTCTATCAGCACTGCTGGAATTTGTTCCAAGTTTTGAGATGGTAAGAGGGCGTCATGCTGCCAGCATTCAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCAGCTTTTGTAGAGTCAAGAGATAGATTACTAAAGGCTTTAAGAGCTATAAATGCTGGAGATGCTGCAGATCAAGTAATCAGGCAAGTGGACAAAATGGTGAAAGCCGCAGATCGAGCTTCACGTGATGCTTGGCTGGGCAAGCTAAATGCATCGGTGGATCTAACAAGAAAAAGACCTAGGCTTGTGGACGATGAAGAAATTTCCAATGGTCGGGAGGTTTTCAAGCAAAATCGCTTTGGTCCAGATGTTCACCTAATTTCTGCAAATCAGAAAGATGGTTCTCTGCAGAATGCCATCTCTAATGGGGCATCCCATGATGTTCCTACGTTAGATGTTGAATTGACTCCTGCAGAGCAGATGATTGCCATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTCTGATTTCAAATATTCATCCCGACCTGTTGGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAGGCCTCCCCTCCTTTAACTCGGCATGGGGACTTGCCTGTAACTCGCCAAGGAAGTAGTCATGTGCAGGTTTTGGCACCATCAGCCCCATTGAGTTCTGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTTCTTCTTTGGTCACCTCTGCTTGTTCAGCTATCGCTGAGTCTACTGTCAATAGTCTCCCGGTTGATTCTAAACGTGATCCAAGAAGGGATCCCCGTCGCCTTGATCCTCGTCGTGGAGGAGTATCTTCTACTTCTAATGTGGAAGAGGCAAGTTCAAATATATCTGATGTTGATGGCTCCATATCTTTGAGAAAATCTGCTTCAGTTCCTGTTTCTGTGACGATTGAGCATTCCTCAGTATCTGTTATAGCAAAAACGAAAGTTGAAGAAAAACCAATAGAAACTCCATTCGTGTTTGGAACAGACCAATCAACCCCCAAATCAAAATCTCCGGATAGAGCCGAGAAAGTTGACACTATAGTAGAGATTAATGCCCCTCTGGATCCCATGCCTTCTGCAGTTGGAAAATCTGATGATGGTTTAGTTGCAGCTAATTTGTTCGATGACTCAGCAACAAAGAGGGATGATACATCATCTTCCATGGAATACAATCAGTATTCTCCATCAGTTACGAATGCAGTTGCATCTGAAGATACCTGCGAGGAATTGCCTCTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAATAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGCAAGAATTTGAATGGGGCAGACTGCCATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGATGCTGATGATGATATTGTTCGAATGTTGGAAAAACAAGTCGCTGTTGATTACCAACAGCAAAAGGGGCATGAGCTTGCTTTGCATGTCTTATATCACCTGCATTCACTTGATATTCTGGATTCAGTGGAAAGTTCTTCTTTTGCTGTGTACGAGAAATTTCTTCTAGTTGTGGCTAAATCATTGCTAGATTCTTTTCCAGCTTCAGACAAATCTTTTAGTCGACTTCTTGGTGAAGTTCCAGTTTTGCCTAACTCTACATTGGAACTATTACATAACCTTTGCCATTGTTATATTACTGACACCCATGGGAAGGATACTCCTGATATTGAACGTGTCACTCAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTAAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACATGTTCCTGTCTGCAGTAGACGCTGGAGATAGGACAGATGTAGAGCCTTCACCATGTGGATCGATTGAACAAAGAAGAGAGGGTGAGAGTCAGGAAACATCCTTTTGCGGTTCTCAAGTTTCAGATCCTGGAACCTCAGAAAACAATTCCATGAGGAGTTCACAACCTACAGTTCATGGCAGTTCAACCTTGTCACTTTCAGAAGCCGAAAGACATATTTCTCTTCTTTTTGCTCTATGCATGAAGAAACCTTGTCTGCTTCAGTTTGTATTTGATGCTTATGGACGGGCTCCTAGAGCAGTGAAAGAGGCCGTTCAGGAACATATCCCTAATCTTATTACGGCCCTAGGGTCATCTGATTCTGAATTGCTTAGAATAATATCAGATCCACCTCAAGGAAGTGAACATCTTTTAGCATTGGTACTAACTCAAGAGACAACGCCTTCTTCTGATCTGATCGCAACTGTTAAACATTTATATGAAACTAAACTGAAGGATGTGACAATTCTCATTCCAATGTTGTCCTCACTTTCCAAAAACGAGGTTTTACCTGTCTTTCCTCGGCTGGTTGATCTTCCTTTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGCTCAGCACATACACGTCCAGCTTTAACACCCGTTGAAGTGTTGATTGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTTTTCACTCAGCAGGTTCTAGCAAAAGCCTTGGGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGCGAACTGTGATTCAGGCAATTGATGCTTTTCCTACTCTGGTTGATTTTGTCATGGAGATACTTTCCAAACTTGTAAACAAACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTTTTGAAATGTGCTTTTCAAACACAGCCTCATTCCTTTCGAGTACTATTACAGTTACCACCACCACAACTTGAAAATGCTCTGAATAAATATGTTAACCTTAAAGGTCCTCTGGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGACGCTCGTAGTTCTGGGTCTTGAAAACGAAAGGCATTTGTAG 3480 42.24 MWMRMLKFKDNVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGNVFNISWLAGGFSILDPVGLMSEASRMLGILLNLLQTGSVPGTYTVTVVSSLAAIARKRPVHYGNILSALLEFVPSFEMVRGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRAINAGDAADQVIRQVDKMVKAADRASRDAWLGKLNASVDLTRKRPRLVDDEEISNGREVFKQNRFGPDVHLISANQKDGSLQNAISNGASHDVPTLDVELTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTRHGDLPVTRQGSSHVQVLAPSAPLSSVQTSVATAQVPSSLVTSACSAIAESTVNSLPVDSKRDPRRDPRRLDPRRGGVSSTSNVEEASSNISDVDGSISLRKSASVPVSVTIEHSSVSVIAKTKVEEKPIETPFVFGTDQSTPKSKSPDRAEKVDTIVEINAPLDPMPSAVGKSDDGLVAANLFDDSATKRDDTSSSMEYNQYSPSVTNAVASEDTCEELPLLPPYVDLTPEQQITVRNLAAEKIFDSCKNLNGADCHQIRLAIIARLVAQVDADDDIVRMLEKQVAVDYQQQKGHELALHVLYHLHSLDILDSVESSSFAVYEKFLLVVAKSLLDSFPASDKSFSRLLGEVPVLPNSTLELLHNLCHCYITDTHGKDTPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDAGDRTDVEPSPCGSIEQRREGESQETSFCGSQVSDPGTSENNSMRSSQPTVHGSSTLSLSEAERHISLLFALCMKKPCLLQFVFDAYGRAPRAVKEAVQEHIPNLITALGSSDSELLRIISDPPQGSEHLLALVLTQETTPSSDLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALGQMVEQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNKQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPTLVVLGLENERHL 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103809888 103837274 + Tan0007587.2 Tan01g3888 741312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3888 1159 MobiDBLite consensus disorder prediction 809 841 - -
Tan01g3888 1159 MobiDBLite consensus disorder prediction 405 421 - -
Tan01g3888 1159 Pfam Symplekin tight junction protein C terminal 944 1122 IPR022075 -
Tan01g3888 1159 Pfam Symplekin/PTA1 N-terminal 1 177 IPR032460 -
Tan01g3888 1159 MobiDBLite consensus disorder prediction 388 403 - -
Tan01g3888 1159 SUPERFAMILY ARM repeat 650 1121 IPR016024 -
Tan01g3888 1159 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1157 - -
Tan01g3888 1159 Gene3D - 1 204 IPR011989 -
Tan01g3888 1159 MobiDBLite consensus disorder prediction 383 421 - -
Tan01g3888 1159 MobiDBLite consensus disorder prediction 790 841 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3888 K06100 - - csv:101202828 2008.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3888 Tan-Chr1:103809888 Tan03g0785 Tan-Chr3:63932452 2.20E-194 dispersed
Tan01g3887 Tan-Chr1:103809888 Tan01g3888 Tan-Chr1:103809888 0.00E+00 tandem
Tan01g3888 Tan-Chr1:103809888 Tan01g3889 Tan-Chr1:103809888 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g565 Blo01g01788 . . . Bpe02g00153 . . Bma01g02573 . . Cma01g01458 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00180 . . . Bda11g00813 . . . . . . Cmo01g01510 . . . . . . . Bhi09g02541 Tan01g3888 . . Hepe01g2195 Mch11g0740 . . . . . . . . . . . Cme04g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40