Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3892 ATGTCGTCTCTACATTTTCTCTGTCTTCTCTCTCTTTTGAGCTTGCTCACTGGGATCAAATCAGACGAGCGTCAAATTCTAACCAAACTCAAAACCAATCTCCAAAATTCAAACACCAATGTGTTCCACAACTGGGGACTCCAAACCGACATCTGCAACTTCACTGGAATCACCTGTAATTCAGAAAAGTTCATCAGGGAAATTGACCTTTCCAAAAGGGGTTTATCTGGGGTTGTTCCTTTTGATTTCGTTTGTCAATTGAAGTCATTGGAGAAGCTGGCTTTTGGGTTCAATCTCTTGAATGGTGAAGCAACGGAGGATTTGAACAAGTGTGTCAAATTGAAGTATTTGGATCTTGGTAGCAATTCCTTCTCTGGATCCTTCCCTGACATACATTCTTTGAGTGAGTTGCAGTATCTGTATTTGAATTTAAGTGGATTTTCGGGGAAGTTTCCATGGAAATCAATTGGGAATTTGACTGATTTGATTGAGTTGAGCATTGGGGATAACGCTTTCGACAACACTACGTTTCCAGTGGAGGTCACAAATTTGAAGAAACTCAGTTGGCTTTATATGTCAAATTGCAGCTTAAAAGGGGAAATTCCAAGGTCTATAGGTAATCTCACAGAACTTCGTAACTTGGAATTTTCAGACAATTATATCACAGGGATAATTCCGGCGGAGATTGGCTACCTGAAGAATCTATGGCAGTTGGAGTTTTTCAACAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAACCTAACCAGGCTTGAGAATTTCGATGCTTCGCTTAATCATATCCGTGGGGATCTATCAGAATTGAGGTTTTTGACGAACCTGGTTACGCTGCAACTCTTTGACAACGAACTCTCCGGCCATGTTCCGGTGGAATTTGGTGAATTCAAGTCGCTTGTGAATCTCTCCCTTTACACTAACAGGCTTACGGGTCCAGTTCCGCAATCGATTGGTTCTTGGACGAAGTTTAATTTCATCGATGTATCTGAAAATTTCTTGACGGGCCCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGACGAAGCTTCTCATGCTTCAGAACAATTTCACCGGCGAAATTCCGGCGACCTACGCTAATTGCTCCACTTTAACCCGATTTAGAGTCAGTAAGAACTCGCTCACCGGCGTCGTTCCTTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCGTCAAATCAATTGGAAGGTTCGATTACTTCCGATATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGATTATCAGGTCGATTGCCACTGGAGATTTCGCAAGCCAGATCTCTTGCTTCGGTTGATTTGAGCAATAATCAGTTCTCCGATGAACTTCCGACGACTATCGGTGACCTGAAGTATCTCGATAGCCTCGAATTTCAGAGCAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTCGTGTAATTCCCTGACTATCGTCAATCTCGCGAAAAATTTCTTCACTGGACAAATCCCTTCGTCCCTAGGGTTTCTTCAAGTTCTAAACTCTCTAAATCTCTCCAATAACGAACTCTCTGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTAAGTCTCCTTGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAATCGCTCTCGAACGGAGCTTACAAAGAAAGCTTCGCTGGAAACCCTGGCCTCTGCAGTGAGGCCGATGGCTTTTTACGGCGATGTTCACAGAGTTCAGGAACGTCCAAGGACGTCCGTACACTCGTCATCTGTTTCGCCGTCGGATTACTTCTTCTCAGCGTAACGCTATGGTGCTTCATAACCTTGAAAAAGAGCGAAAAAGATAGAGATCGTTCGCTTAAAGAGGAATCGTGGGACCTGAAATCCTTCCACGTAATGACGTTCACAGAGGACGAGATCCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCTGGCAACGTTTACAAAGTGACCGTCGGAAACGGGAAAGAGCTCGCCGTGAAGCATATATGGAACACCGATCCGTACGACGGCAAGAACAACAATCGGAGCTCATCGCCGATTCTGCGGAAACAAAGAACGAAGTCCTCGGAATTCGATTCGGAGGTGAAGACTCTGAGCTCAATCCGCCATGTGAACGTGGTGAAGCTCTACTGCAGCATTACGAGCGAGGTCTCAAGCCTGTTGGTGTACGAATATATGCCTAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACCAGATACGAAATCGCTGTCGGAGCGGCGAAGGGCTTGGAGTATCTTCATCACAGCTGTGATCGGCCGGTGATCCACCGGGATGTTAAGTCCAGTAACATACTTTTGGATGAATTTCTCAAGCCCAGAATCGCGGATTTTGGGCTTGCCAAAATCCTTCATGCTAGTGGGTTCAACGATACCACCCATGTCATTGCCGGCACCCTGGGCTACATTGCTCCAGAGTATGCATATACTTACAAAGTAGACGAGAAGAGTGACGTGTATAGTTTTGGAGTTGTGTTGCTAGAGTTAGTGAGCGGGAGAAAGGCGATCGAGGCGGAGTTTGGAGAGAACAAGGACATTGTGCAATGGGTATCAAACAATTTGAAGACAAGAGAGAGTGTGTTAAGCTTGGTAGATTCAAGAATTCCAGATGGGTTTAAAGAGGATGTTATTAAAGTATTGAGAATTGCAATTTTGTGCACAGCCAGAGTTCCAACATTGAGACCCACAATGAGAAGTGTGGTTCAAATGCTTGAAGAAGCCCAACCCTGTCGATTGGTTGGGATTGTGATTAGCAAAGAAAAAAAGGAATTATCCATAGATATCAATAAGATTAGTCTCTAA 2925 44.24 MSSLHFLCLLSLLSLLTGIKSDERQILTKLKTNLQNSNTNVFHNWGLQTDICNFTGITCNSEKFIREIDLSKRGLSGVVPFDFVCQLKSLEKLAFGFNLLNGEATEDLNKCVKLKYLDLGSNSFSGSFPDIHSLSELQYLYLNLSGFSGKFPWKSIGNLTDLIELSIGDNAFDNTTFPVEVTNLKKLSWLYMSNCSLKGEIPRSIGNLTELRNLEFSDNYITGIIPAEIGYLKNLWQLEFFNNQLTGTLPVGLRNLTRLENFDASLNHIRGDLSELRFLTNLVTLQLFDNELSGHVPVEFGEFKSLVNLSLYTNRLTGPVPQSIGSWTKFNFIDVSENFLTGPIPPDMCKKGTMTKLLMLQNNFTGEIPATYANCSTLTRFRVSKNSLTGVVPSGIWGLPNVNIIDLASNQLEGSITSDIGKAVALSELYIGNNRLSGRLPLEISQARSLASVDLSNNQFSDELPTTIGDLKYLDSLEFQSNKFSGSIPETIGSCNSLTIVNLAKNFFTGQIPSSLGFLQVLNSLNLSNNELSGEIPSTFSHLKLSLLDLSNNQLTGPVPQSLSNGAYKESFAGNPGLCSEADGFLRRCSQSSGTSKDVRTLVICFAVGLLLLSVTLWCFITLKKSEKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKELAVKHIWNTDPYDGKNNNRSSSPILRKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHSCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHASGFNDTTHVIAGTLGYIAPEYAYTYKVDEKSDVYSFGVVLLELVSGRKAIEAEFGENKDIVQWVSNNLKTRESVLSLVDSRIPDGFKEDVIKVLRIAILCTARVPTLRPTMRSVVQMLEEAQPCRLVGIVISKEKKELSIDINKISL 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103895862 103899692 + Tan0021285.1 Tan01g3892 741316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3892 974 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Tan01g3892 974 Pfam Leucine Rich Repeat 211 232 IPR001611 GO:0005515(InterPro)
Tan01g3892 974 Pfam Leucine Rich Repeat 522 543 IPR001611 GO:0005515(InterPro)
Tan01g3892 974 Pfam Leucine Rich Repeat 545 565 IPR001611 GO:0005515(InterPro)
Tan01g3892 974 Pfam Leucine Rich Repeat 113 130 IPR001611 GO:0005515(InterPro)
Tan01g3892 974 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Tan01g3892 974 SUPERFAMILY L domain-like 398 565 - -
Tan01g3892 974 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Tan01g3892 974 Gene3D Ribonuclease Inhibitor 177 276 IPR032675 -
Tan01g3892 974 FunFam Inactive leucine-rich repeat receptor-like protein kinase 371 465 - -
Tan01g3892 974 ProSiteProfiles Protein kinase domain profile. 658 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3892 974 FunFam Receptor-like protein kinase HAIKU2 641 751 - -
Tan01g3892 974 Pfam Protein kinase domain 660 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3892 974 Gene3D Ribonuclease Inhibitor 277 597 IPR032675 -
Tan01g3892 974 FunFam Receptor-like protein kinase 7 104 353 - -
Tan01g3892 974 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 466 587 - -
Tan01g3892 974 Gene3D Ribonuclease Inhibitor 20 176 IPR032675 -
Tan01g3892 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3892 974 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Tan01g3892 974 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 275 947 IPR051716 -
Tan01g3892 974 SUPERFAMILY Protein kinase-like (PK-like) 648 946 IPR011009 -
Tan01g3892 974 SUPERFAMILY L domain-like 152 440 - -
Tan01g3892 974 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 752 963 - -
Tan01g3892 974 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524(InterPro)
Tan01g3892 974 Gene3D Transferase(Phosphotransferase) domain 1 752 958 - -
Tan01g3892 974 SMART serkin_6 658 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3892 974 SUPERFAMILY L domain-like 22 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3892 Tan-Chr1:103895862 Tan02g1083 Tan-Chr2:18453850 2.50E-162 dispersed
Tan01g3892 Tan-Chr1:103895862 Tan01g3893 Tan-Chr1:103922963 1.70E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67107 PF00069 Pkinase 6.80E-43 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3892 - - - 0.0