Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3893 ATGCCCCTTCTTTTGTTCTTCTTCTTCTTTCTTCTCTCTTTGATTTCTCAGGCCCTTGGAAATGATCAATCTCAATTTTTCTCTCTGATGCGGAAGGCGGTGGTCGGGAATTCTCTGCCGTCCGATTGGGATGGGAAATCGTTCTGTAATTTCACTGGTGTCAGCTGTAATGAGAAGGGTTTTGTGGTGGGGATTGATCTCTCCGGCCGGGCGGTTTCCGGGTTGTTTCCGGAGGATGTGTGTTCTTATTTGCCGGAGTTGAGAGTGCTCCGTCTTGGCCGGAGTGGGTTTGGTGGAACCTTTCCACGTGGCGTAACGAATTGCTCTGTTTTGGAAGAACTGGACATGACCTATCTGTCTCTGACTGGGACGCTACCGGATTTCTCGCCGTTGAAAAGCCTGAGGATTCTCGACTTGTCGTACAACAACTTCACTGGCGACTTCCCGTTGTCGGTCTTCCGTTTGACGAATCTCGAGAGGCTGAATTTCAACGAGGATAGCAATTTCAACACGTGGCAGTTGCCGGATAGTATCTCCGGCTTGACGAAGCTGAAATCAATGGTGTTGACGACTTGTATGCTGGAAGGTCGAATTCCTCCGGCGATTGGAAACATGACGGCGCTCGTTGACCTCGAATTAAGCGGCAACTTCCTCGCCGGAAAAATCCCGAAAGAAATCGGGAATCTGAAGAATTTGAGACAGTTGGAGCTTTATTACAACTCATTCGTCGGCGAAATCCCCGAGGAGCTTGCGAATTTGACGGAGCTCGTGGACTTGGATATGTCGGTCAATAAGTTGACTGGGAAACTTCCAGAGTCAATTTGTCGTCTTCCTAAGCTCGAAGTCCTTCAGCTTTACAATAACTGCTTAACAGGGGAGATTCCAATTTTAATTTCAAATTCAACAACGCTCACTATGTTATCTCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCGCCCATGGTCGTTCTCGACTTGTCGGAGAACAATTTCTCCGGTCCCTTACCGACGGATGTCTGTGGAGGAGGTAAATTAATGTATTTTCTCATGTTGGAAAACAAATTCTCCGGTCAAATCCCGCCGTCGTACGGTAAATGCCAGTCCCTGTTACGGTTTCGAGTCAGTTCCAATTTTTTGGAAGGTCCGGTGCCGGCGGGGCTTCTGGGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGAGCGGCGAAATTCCCAATTCTTTTGTGAAAGCCAGGAATCTCTCGGAATTGTTCATGCAGAGCAATAAAATTTCCGGCGTGTTGCCTCTGGAAATCTCTAAAGCGACGAATTTGGTTAAGATTGATCTCAGCAACAATCTCTTGTCGGGTCCAATTCCTTCTGAGATTGGGAATCTCAAGAGGCTTAATTTGCTGCTCTTGCAAGGAAATCAGCTGAATTCTTCAATACCCACTTCACTTTCGCAGCTCAAATCTCTGAATGTTCTTGATTTATCCGACAATCTATTGACAGGAAACATCCCAGAAAGTCTCTGCGAATTGTTGCCGAATTCAATCAATTTCTCGAACAATCAACTCTCAGGTCCGATTCCTCTGTCTCTAATCAAAGGTGGATTAGTGGAAAGCTTCTCCGGCAACCCGGGACTGTGCGTTTCGGTTTATTTAGATTCATCCGATCATAAATTCCCAGTTTGCTCTCAAAAGTTCAACAAAAAGCGACTGAATTCCATCTGGGCAATCGGAGTATCAGCATTCATAATCTTCATCGGAGCTGCCCTGTATCTAAAACGACGATTGAGCAGAGAAAAATCAATAATGGAACAGGAGGAGACAGTGTCTTCATCGTTCTTCTCGTACGACGTCAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGACAAGAACATCGTGGGCCAGGGCGGGTCCGGCACAGTGTACAAAATCGAGCTAAGCAGCGGCGAAATCGTAGCCGTTAAAAAGCTGTGGAGTCGGAAAGGGAAGGATACGACGTCGGATCAGGATCAGTTGTATTTAGACAAGGAATTGAAAACGGAAGTGGAGACTTTGGGGAGTATAAGGCATAAAAATATAGTGAAATTGTATTGCTATTTTTCGAGCTTGGATTGCAGGCTTTTGGTTTATGAGTATATGCCAAATGGGAATTTGTGGGACGCTTTGCATAAGGGTTGGGTTCATTTGGATTGGCCAACGAGGCACCAGATTGCGCTGGGTATAGCGCAGGGCTTGGCTTATCTTCATCATGATTTGTTGCCTTCTATTATTCATAGGGACATTAAGACCACTAATATTTTGCTCGATGTCAATTATCAACCTAAAGTTGCAGACTTTGGTATTGCTAAGGTTTTGCAAGCTAGAGCTGGGAAGGATTCTACTACCACCGTCATCGCCGGGACTTATGGATATCTAGCCCCGGAGTATGCATATTCATCAAAAGCAACAACAAAGTGCGACGTATACAGCTTTGGAATCGTGTTAATGGAGCTAATAACAGGGAAGAAGCCAGTGGAAGCAGAGTTTGGAGAGAACAAAAACATCATATATTGGGTGTCAAATAAAGTGGACACAAAAGAAGGAGCCAAAGAAGTATTAGACAAAAGAGTTTCAGGGACATTTAAAGATGAAATGATTCAAGTTCTAAGAATTGCAATTCGATGCACATACAAGAATCCAGCCCTTCGACCCACCATGAAAGAAGTGGTTCAGCTATTGATTGAAGCTGACCCTTGCAAATTTGATTCTCAAAACAAATGTTCCAAACACACCACCACCAAAATCAAGAACAACCCATTTGAGCTATGA 2850 44.67 MPLLLFFFFFLLSLISQALGNDQSQFFSLMRKAVVGNSLPSDWDGKSFCNFTGVSCNEKGFVVGIDLSGRAVSGLFPEDVCSYLPELRVLRLGRSGFGGTFPRGVTNCSVLEELDMTYLSLTGTLPDFSPLKSLRILDLSYNNFTGDFPLSVFRLTNLERLNFNEDSNFNTWQLPDSISGLTKLKSMVLTTCMLEGRIPPAIGNMTALVDLELSGNFLAGKIPKEIGNLKNLRQLELYYNSFVGEIPEELANLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNCLTGEIPILISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENNFSGPLPTDVCGGGKLMYFLMLENKFSGQIPPSYGKCQSLLRFRVSSNFLEGPVPAGLLGLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNKISGVLPLEISKATNLVKIDLSNNLLSGPIPSEIGNLKRLNLLLLQGNQLNSSIPTSLSQLKSLNVLDLSDNLLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDHKFPVCSQKFNKKRLNSIWAIGVSAFIIFIGAALYLKRRLSREKSIMEQEETVSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGQGGSGTVYKIELSSGEIVAVKKLWSRKGKDTTSDQDQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCRLLVYEYMPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYQPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAKEVLDKRVSGTFKDEMIQVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSQNKCSKHTTTKIKNNPFEL 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103922963 103927836 + Tan0004804.1 Tan01g3893 741317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3893 949 ProSitePatterns Protein kinases ATP-binding region signature. 647 670 IPR017441 GO:0005524(InterPro)
Tan01g3893 949 SUPERFAMILY Protein kinase-like (PK-like) 628 920 IPR011009 -
Tan01g3893 949 FunFam receptor protein-tyrosine kinase CEPR1 624 726 - -
Tan01g3893 949 Gene3D Transferase(Phosphotransferase) domain 1 727 944 - -
Tan01g3893 949 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Tan01g3893 949 Pfam Leucine Rich Repeat 495 517 IPR001611 GO:0005515(InterPro)
Tan01g3893 949 Pfam Leucine Rich Repeat 133 153 IPR001611 GO:0005515(InterPro)
Tan01g3893 949 Pfam Leucine Rich Repeat 279 300 IPR001611 GO:0005515(InterPro)
Tan01g3893 949 Pfam Leucine Rich Repeat 256 277 IPR001611 GO:0005515(InterPro)
Tan01g3893 949 Pfam Leucine Rich Repeat 447 469 IPR001611 GO:0005515(InterPro)
Tan01g3893 949 Pfam Protein kinase domain 644 918 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3893 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g3893 949 SUPERFAMILY RNI-like 65 340 - -
Tan01g3893 949 SMART LRR_typ_2 229 253 IPR003591 -
Tan01g3893 949 SMART LRR_typ_2 131 155 IPR003591 -
Tan01g3893 949 SMART LRR_typ_2 493 517 IPR003591 -
Tan01g3893 949 SMART LRR_typ_2 277 301 IPR003591 -
Tan01g3893 949 Gene3D Ribonuclease Inhibitor 290 562 IPR032675 -
Tan01g3893 949 SMART serkin_6 641 927 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3893 949 ProSiteProfiles Protein kinase domain profile. 641 921 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g3893 949 FunFam Leucine-rich repeat receptor-like protein kinase 171 273 - -
Tan01g3893 949 Gene3D Phosphorylase Kinase; domain 1 624 726 - -
Tan01g3893 949 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 921 IPR050647 -
Tan01g3893 949 FunFam Receptor protein-tyrosine kinase CEPR1 277 562 - -
Tan01g3893 949 Gene3D Ribonuclease Inhibitor 19 168 IPR032675 -
Tan01g3893 949 SUPERFAMILY L domain-like 246 557 - -
Tan01g3893 949 Gene3D Ribonuclease Inhibitor 169 289 IPR032675 -
Tan01g3893 949 FunFam leucine-rich repeat receptor-like protein kinase TDR 727 932 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3893 Tan-Chr1:103922963 Tan02g2519 Tan-Chr2:93824280 5.90E-185 dispersed
Tan01g3892 Tan-Chr1:103895862 Tan01g3893 Tan-Chr1:103922963 1.70E-94 tandem
Tan02g1083 Tan-Chr2:18453850 Tan01g3893 Tan-Chr1:103922963 2.60E-90 transposed
Tan09g2325 Tan-Chr9:73061596 Tan01g3893 Tan-Chr1:103922963 7.80E-56 transposed
Tan01g3893 Tan-Chr1:103922963 Tan03g1728 Tan-Chr3:73213135 3.40E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67108 PF00069 Pkinase 2.10E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3893 - - - 0.0