Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3895 ATGTCTGCTCCACTGACTCCCTCAAAGAGATCACGTGATCGGAACTCTGCCAAGCCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCAATCCTTCAAACTCTCTCCTGGTTATGCTGTCTTTCGTGTCCTCTTTCCTGTTTCCAGAATTGGCAGCCTTATAGGTGGAGATGGGGATGTTTTATCTCAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGAAATTGTCCCTGGAAGTGATGAGAGAATAGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAAGCCTGAGCAGAATAATAAGGAAGACAAGAAAAATTCTGAAGTCAAGGAGAACGATGGTGATACTGCCGAGTGTAAAAAGACGGAAGATAAAGATTCTCCTCCTTTGGAAGATGCTAAACAGAAGGAAGTTCCACATTTGCCATTGCGAAAAGCCCTATTTCTTGTTTCTGAGAAGATCTTCGATGAAGAACCAGTGGTAGATGGAACAGATGTTGAAGGTGATAAGCTGTCTACATTCGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTTGTCAAACAAATGTCGTCTGATAGTGGAGCGCAAATTAGAATTCTCCCTAGGGATAAACTTCCTACCTGTGCAGCATCCAGTGATGAGTTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCTCATGATAAAGATACTGTCGCCTCAAGCATGACTGCACAGTCATCACATTCATCTGGACATTCTCTCCCTAGGACTCATGAATATCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATGTTCATTCCAGTGTTCCTTCTCTTGCTTCTAAACAGTATGAAACCAGCATTCCTGGTCGAATCCAACCTTCTCATGAAATTTTAAGTTTTCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTAGTGAAGACTCTTCAGCAAGAGACAGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAGGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGAAGACAGAATATCACCAGTGCAAGATGCTGTTTTTCGTGTTCAGGCCAGGATTGTCAAGGCTGTACCTGACAGCAAGGATCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGGTTCCAAAGTGTGCTGGAGAAGAAGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAGCAGTTCAAGATGCTATGTTGCAGATTACTACTCGGCTGAGACATCATTTTTTCCGCGATGCATTTCCATCGGCTAATAGTCATCCGAATCCTGCATTCATTGATCGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGGGAATTATCACCTCCAGGAATCTATTCAAATTTAGGCCCCTCATTTCACAAGTTTGATGCTCTGAGTGGCATTTCTTCACTTAGTGATTTGCGGGATGATCGGCCTCCTTTTCTTCGTAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGACTAGTTGAAGGTGGTGTTGGCTTGCCAGACTTTGCAGGAGTCCATCATAGAAGAATTGCTGGATTTGGAGGAGGAAACAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTCGTCCCTGTTATTTGTGGAGAGAATGGTGAATGTTTGAGACAGATTCGTCAGATTTCTGATGCAAAAATTACGATTACTGAGCCAGAGCAAGGAGCAGTTGAAACTGTAATTATCATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTAATCAGTGAGACCGACTCTAGTTGA 2082 43.37 MSAPLTPSKRSRDRNSAKPNGKGKWQKSSGSRSQNQSFKLSPGYAVFRVLFPVSRIGSLIGGDGDVLSQIREETGVEIRVEEIVPGSDERIVVIGGSNQETEVKPEQNNKEDKKNSEVKENDGDTAECKKTEDKDSPPLEDAKQKEVPHLPLRKALFLVSEKIFDEEPVVDGTDVEGDKLSTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPTCAASSDELVQISGGIDVVKKALELVFQQLMENSPHDKDTVASSMTAQSSHSSGHSLPRTHEYPLGSSSFNTHGGPYSVPRDVGNVHSSVPSLASKQYETSIPGRIQPSHEILSFRLLCPSERVGNVIGKGGAVVKTLQQETGCDIKVVEGALDSEDRIILVAGPAHPEDRISPVQDAVFRVQARIVKAVPDSKDQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQVPKCAGEEEEVVQINGEPEAVQDAMLQITTRLRHHFFRDAFPSANSHPNPAFIDRLPSFPSYFGRRELSPPGIYSNLGPSFHKFDALSGISSLSDLRDDRPPFLRRPGAPLLSDRKPWSSQGLVEGGVGLPDFAGVHHRRIAGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLRQIRQISDAKITITEPEQGAVETVIIISGTPEQTHAAQSLIQAFVISETDSS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 103970750 103974803 - Tan0009296.1 Tan01g3895 741319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3895 693 Gene3D K Homology domain, type 1 337 413 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 615 687 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 Gene3D K Homology domain, type 1 44 107 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 Gene3D K Homology domain, type 1 419 499 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 Gene3D K Homology domain, type 1 180 259 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 Pfam KH domain 185 251 IPR004088 GO:0003723(InterPro)
Tan01g3895 693 Pfam KH domain 425 491 IPR004088 GO:0003723(InterPro)
Tan01g3895 693 Pfam KH domain 47 100 IPR004088 GO:0003723(InterPro)
Tan01g3895 693 Pfam KH domain 620 683 IPR004088 GO:0003723(InterPro)
Tan01g3895 693 Pfam KH domain 340 391 IPR004088 GO:0003723(InterPro)
Tan01g3895 693 MobiDBLite consensus disorder prediction 104 145 - -
Tan01g3895 693 SMART kh_6 617 687 IPR004087 GO:0003676(InterPro)
Tan01g3895 693 SMART kh_6 181 256 IPR004087 GO:0003676(InterPro)
Tan01g3895 693 SMART kh_6 421 496 IPR004087 GO:0003676(InterPro)
Tan01g3895 693 SMART kh_6 336 416 IPR004087 GO:0003676(InterPro)
Tan01g3895 693 SMART kh_6 43 113 IPR004087 GO:0003676(InterPro)
Tan01g3895 693 MobiDBLite consensus disorder prediction 90 145 - -
Tan01g3895 693 MobiDBLite consensus disorder prediction 1 38 - -
Tan01g3895 693 CDD KH-I_PEPPER_rpt1_like 340 405 - -
Tan01g3895 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 339 413 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 ProSiteProfiles Type-1 KH domain profile. 422 491 - -
Tan01g3895 693 CDD KH-I_PEPPER_rpt2_like 184 255 - -
Tan01g3895 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 258 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 417 503 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 613 683 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Tan01g3895 693 ProSiteProfiles Type-1 KH domain profile. 618 682 - -
Tan01g3895 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 99 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 Gene3D K Homology domain, type 1 616 689 IPR036612 GO:0003723(InterPro)
Tan01g3895 693 CDD KH-I_PEPPER_rpt2_like 424 496 - -
Tan01g3895 693 ProSiteProfiles Type-1 KH domain profile. 182 251 - -
Tan01g3895 693 ProSiteProfiles Type-1 KH domain profile. 44 110 - -
Tan01g3895 693 MobiDBLite consensus disorder prediction 21 38 - -
Tan01g3895 693 ProSiteProfiles Type-1 KH domain profile. 337 404 - -
Tan01g3895 693 MobiDBLite consensus disorder prediction 261 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3895 K21444 - - csv:101221201 1169.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3895 Tan-Chr1:103970750 Tan02g1140 Tan-Chr2:23495768 5.80E-89 dispersed
Tan01g3895 Tan-Chr1:103970750 Tan07g2257 Tan-Chr7:73957506 2.80E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35