Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3903 ATGTTTTCAATCTCTGCAATTAATGACACAGACTCCAGAAATCAGTGGGAACCCTTAGCTCCCACTAAAGAAGCTCAGGAATTCCATCTGACACAAACTTACCACGATGGACTTCTTAAGTTAGAAGCAAAAGAATATGAAAAGGCTCGTGAATTGTTAGAATCCGTTCTCAAGGATCATTTGATAGCATCTGCACAGGTTGATGGTGAAGCTGGTGATAGTCATCTACTGCAGCTCAGATTCTTAGCTCTTAAGAACCTTGCCTCTGTATTTCTACAACAGGGATCTGCACATTATGAGGGTGCTTTGCATTGCTATCTTCAAGCCGTGGAAATTGATTCTAAAGATTCTGTTGTTTGGAACCAGCTGGGTACTTTATCTTGCTCAATGGGCTTACTTAGTATTTCACGATGGGCATTTGAGCAAGGACTTGTATGCAGCCCTAATAATTGGAATTGCATGGAGAAGCTATTGGAAGTTCTAATTGCCATACGTGATGAGGTAGCCTGTCTTTCTGTAGCAGAATTGATTTTGAGGCACTGGCCATCACATGCTCGTGCTTTGCACGTGAAACGTACAATTGAAGAGTCAGAACCTGTTCCATATGCACCCAAAGGTATTGATAAGCTAGAACCAAAACATGTCCGACTCAAATTTACTGATAAGAGGAAGGCTACTGAAGAGGATCTTGATGAAGATGTCAAAGTGAAAAGGTCAAACCAGAATATAGATCTCCACCTAGCAGAAGCTTCCTGGGCCTGTCTTGTTGATGCACTCTTAGATATCTTACATCCATTGAGTGGATGTGGGTCTGAGGTGGAGGTTGAAAAAGGACTTATATCTGGTGATGTTAGATTAAAAATTTGCTTGCCTCCCAGTTTAGATCGTACTACTGCATTTATGGAGAGGAAAGAGCTTGCTTCTACCTCCATTTGTGGAAATATATCTCTTGCAGATTTTAATACGGAAAATTCATCTTCTTTTAAAGAAAAAGAGGTAAGTGGTTTAGATGAACATCCACAGGAGAGACGTAGTACGCGTCTTGAAAGGCTAAGAAGTCGTAAGCCTGGAAAAGAAGAATTAGATTATTCGGCAAGTAAAGATCTGGCCAGGGTTGTAACTCAGTATCTAGAACCCTTTATTTCCAATGCTTTGGGAACCAAAGATACCGACCGTGATACCAGGAATTCTGTTTCCTATCCTGATGGGGAGAATTCATGGGGTTTGGACTGCAATGATGTTCATACTTTTTTGGTTGAAACTTCCTGTAATTATGGTGCTTACCATGTGAGTCATATGCTTTTAGAAAAGCTTTCAAGCACATATCCTTCATTTCAGGATGCATTTTTCAAATTTCTGGACTTGGAAAAGTTGACAAGACATTGGGGAAAGGATAGATCTCTCGAATGCAATCTTTTTCTTGCTGAACTCTATTTTGACTTTGGCTCATCCTCTTCTGATACTTCCAAGCAATCTGAATTCATGTCAGAGTCTTCATATCATCTCTGTAAGATCATTGAATTAGTAGCCCTGGAATATCCCTTGAATTTGAGTTATGTCCCAAAGAGTAATAATTGCTCTAGCAGTATTCAAGGTGCCAGCGGAATATCATCTGAAAATTCTAGTAACCAGCATTTATCTGTTGAAAATTCACTTTTAACAAACAACAGATCCTTCTGGGTACGATTCTTTTGGCTTAGTGGGCAATTATCTTTGGGAGATGGAAACAAGGCAAAAGCCTGTGAAGAGTTCTGTATTTCTTTATCACTTCTGGAAAAGAAGAACGATGTGAATGATTCTCTGTCACTGGTCTGCCTCCCTCACTGTCAGGTCTTGAAAAGGTTAACCTTGGACAGAATACTTTATGAAATTAACATTTTAAAGGTTGACCTCTTGATGGAGAGTGTTGTGCCCGAAATGTTTGAGAAAGAAATGTATGAGGAGTGCATCACTTTACTTTCTCCACTTCTATTTGGTGTACAGGAAGTTGACCTTGATGCCTTATCCTTGCATTTTTTAGGAAGAAAAGATGCAGGGATTACTTCGGTAGAACTTGCAGCGATTGATGTTTTAATCAAATCATGTGAGAAGGAAAATCATTTGGATATGGAGATATATTTGAATTCTCACCAACGGAAGCTGCAAATACTCATGGCAGGTGCTGGAATGCATGAATACTATACATCAAGTAAATCCTTTCGCGAGAAGTCAGAGGCAAAAGCACTCTCTGATGTAGAAACGAAGGATAGTGCAAGCAGTCACTGCAACCAACTAGTTGCAGAAGAAGTAAAAGCAATATCTCAATGTATATCACAAGTAAAGAACTCAATCGAACATTCTGGAGACTCAAATGACATTCAGACACGGAGGATTTGTGATATGCAGTTCTTGCTTTTATCGGTCATGTGTAACGTTATAAACATATTCCTCTCCAAGAAGTCTTCTGGGGCAGAAATTGATGATCAAGTTGAAAGATGCTGCCTCGTAGAAGCAGCCATTGCATTCTGCAAACTCCAACATCTTGATCTTTCCGTGCCTGTGAAATCTCACGTTGAGTTAATTGTTGCAACACATGACCTACTTGCAGAATATGGTCTCTGCTGTTGGGGTGAGGGTGAAGGAGAGGAAGGAAAATTTCTAAAATTTTCCATAAAGCATCTCTTAGCTTTGGATATGAAACTTAAATTGAACAGCTCGGTAAATGGGAAAATAATTGAATGTGATGAAATGGAATGGCAGAATTATCAGGTAAAGGCATCTCCAGACCGAGCAAAATTGAATGCTCAAGATTTGGGGTTGAGTCAAAATGATGAAACGAAATCCACGGTGAAGGATGCTAGGGAAGATATAACACAGGAAGGCTTGTCAACTCGTAAATCAATATTGAAAGATGCTACAGAAGGAGAATTTGTTACGCAAGGAAGTGAGGAGTCTGTTAGCAAGTTCAATGCTGGTGAAAATAATAGCGACCAACTAGTAGAATGTGAGAATGAGCAAAATGAAGATGAAAAGGAGGAGCTAGAATTAAAAATTGACAATGCCTTGGATCAGTGCTTTTTCTGCTTGTACGGGTTAAACCTCAGATGCGACTCATCATATGATGATGATCTATCTCTACATAAAAATACTAGCCGTGGGGATTATCAGACCAAAGAACAGTGCGCCGATGTTTTCCAGTATATACTCCCTTATGCAAAGGCTTCATCTAGAACTGGACTAGTCAAGCTCCGAAGGGTTCTAAGAGCCATCCGCAAACACTTCTTAAAACCACCGGAGGATGTATTGGATGGAAATGTGATAGAAAAGTTCCTGGATGATCCTAATTTGTGTGAAGAGAAACTCTCTGATGAAGCTGGTTCAGATGAGTTTCTTATAACAATGACAAAAATATTACTTAATGATGTAGGAAGCATCAAACACTATCGAACATCGGTCTTAGGGAGTTCTGAACCATATTTGGAAGTTTATAGCAACTTGTACTATTTCCTTGCTCAATCCGAGGAAATGAGTGCAACCGACAAATGGCCAGGTTTTGTGCTTACCAAGGAAGGGGAAGAATTTGTACAACATAATGCAAACCTCTTCAAATATGATCTACTGTATAATCCTCTGCGATTTGAGAGCTGGCAAAAACTTGCACATATTTATGACGAGGAGGTAGATCTGTTGCTTAATGATGGTAGTAAGCACATCAATGTCGCAGGATGGAGGAAAAATGATACTTTACCCCATAGAGTGGAGATTAGCCGAAGGAGGAGCAGGCGTTGTCTACTAATGAGTTTAGCTTTAGCAAAGTCACCAACTCAGCAGCGTGAGATACATGAGCTATTAGCACTTGTGTACTACGACAGCCTTCAAAATGTGGTTCCATTTTATGATCAGCGGTCTGTGGTGCCTCCGAAGGATGAAGCATGGTTCAGATTTTGTGAGAACTCCTTGAAACATTTCAAAAAAGCTTTTGCACATCAGCAAGATTGGTCTCATGCATTCTATATGGGCAAACTTAGTGAAAAGCTCGGGCTCTCACATGATAAAGCTCTATCATATTATGCTAAAGCTATTGCCTTAAATCCATCAGCTGTTGATTCTATTTACAGGATGCATGTGTCACGCTTGAAGTTTCTTGGTAAATGTGGAAAGCGAGATCTGCAGGCTTTGAAGGATCTTTCAACTTATGCCTTTGATCAGTCAACTAGAGAGGCTGTGATGGAAATATCAAGTAAATTTGGTCCCAAGACTTCGGATTTACCTGCAGGCATGGATGGCAGTGAAGCATATTCTAAGGATATAAAGCATGATGAATTCGTCAAAGTGGGAGAGGCGTGGCACATGCTTTATAACGATTGTCTTTCTGGTCTTGAAACTTGTGTTGAAGGGGATCTTAAACATTATCATAAAGCCAGATATACACTTGCTCTAGGTCTTTATAGAAGGGGTGAGAGCGGTGATGTGGACAGAGCAAAGGATGAGCTCTCATTTTGTTTTAAATCATCTCGTTCATCCTTTACAATAAATATGTGGGAGATTGACAGCATGGTCAAAAAGGGAAGGCGCAAAACACCAGGTCTTTCTGGGAATAGGAAAGCACTTGAAGTTAATTTACCAGAAAGTTCTCGGAAGTTTATTACATGCATTAGGAAGTACTTGTTGTTTTATTTGAAACTTCTGGAGGAGACTGGAGATATCTGTACCCTTGAGCGTGCTTATATATCACTTCGAGCAGATAAAAGGTTCGCATTGTGCATTGAAGATCTTGTTCCAGTTGCTCTAGGGAGGTATGTCAAGGTTTTGATTACGTCTGTTCGTCAAGTTGGGATTGCTAGCTCCGGTGATGCAAGCGGTTACGAACATATACTAGAGAAAATGTTTGCTCTGTTCATGGAGCAGGGTAACTTATGGCCGGAACTGTGCAGTTTGCCTGAAATACAAGGCCCGGGTATTTCAGAAAGCAATTTGTTTGGGTATCTTCATGATCATATCATTACTTTGGAGAGAAATGTCAAGGTTGAGAATCTTGAAGCAATAAATGAGAAGATTCGCAAACGGTTTAAGAATCCAAAGTTGTCAAATATTAATATTGCAAAAGTTTGCAGACATGCTTCTACTGCATGGTGTAGATCCCTTATAATTAGCTTGGCGCTGATCACTCCTGTACCTTCTGAATCCTCAACTGAAATCCAAGCGTCAAGTTCATTGCCTGTTGGTTTAGAAAGTAACCAGCTTCTTTGTGTGGATTTGCAAATTAATGAATTGTGGAGTTCAACATTTGAGGACTCAACACATCTGAAAAGTCTTGAACCAAAATGGTGCCCGATCTTGTCCAAAATCAATAACGTATTTGTTAAAAGAGCTGCAGAAGTGAATTGGGAAACTGCTAACACTTTGCTTCGATCTTCTTACAACTTTTTCCGCGAGAGCTCTTGTGTGCTCCCATCTGGCTTGAATCTGTATTTAGTTCCATATCGACTAGCAACAGGAGTAAACTTCCAACAGCGCATGGATGGGGTTGAAATTCTAGATTTCAGCATGCCAAGGAAGCTTCTCTTGTGGGCGTACACCCTAGTGCATGGTCATTTCGCTAATATTTCATCGGTGGTGAAGCATTGTGAAGAACATATGAAGTCAAAGTTAAAGAAGGGAGCTGGAAATCCCACCACACAAACTCATGCAAACTTGCCTGCAGTGATATCTTCACCAACAGTTCTAGGCATTGGAAAAGATGGTTCTAACTACAGTGGGGAGACTGATGCAGAAGCATCTCAAGCCACCCCTGTTCCATCGACTTTGTTGTCAGAGAGTCAGACCACAAGCAGTACAATTCCGCTTCTTTCTAGTGGCGACACTCGTAAAAGTTCCTTTTATGGCCCCCAACTTCAACAATGTAGCAGTACCATTGCAGAGAGGATAACTCACGAAGGAGATTCAGACAAAGGATGA 5937 40.39 MFSISAINDTDSRNQWEPLAPTKEAQEFHLTQTYHDGLLKLEAKEYEKARELLESVLKDHLIASAQVDGEAGDSHLLQLRFLALKNLASVFLQQGSAHYEGALHCYLQAVEIDSKDSVVWNQLGTLSCSMGLLSISRWAFEQGLVCSPNNWNCMEKLLEVLIAIRDEVACLSVAELILRHWPSHARALHVKRTIEESEPVPYAPKGIDKLEPKHVRLKFTDKRKATEEDLDEDVKVKRSNQNIDLHLAEASWACLVDALLDILHPLSGCGSEVEVEKGLISGDVRLKICLPPSLDRTTAFMERKELASTSICGNISLADFNTENSSSFKEKEVSGLDEHPQERRSTRLERLRSRKPGKEELDYSASKDLARVVTQYLEPFISNALGTKDTDRDTRNSVSYPDGENSWGLDCNDVHTFLVETSCNYGAYHVSHMLLEKLSSTYPSFQDAFFKFLDLEKLTRHWGKDRSLECNLFLAELYFDFGSSSSDTSKQSEFMSESSYHLCKIIELVALEYPLNLSYVPKSNNCSSSIQGASGISSENSSNQHLSVENSLLTNNRSFWVRFFWLSGQLSLGDGNKAKACEEFCISLSLLEKKNDVNDSLSLVCLPHCQVLKRLTLDRILYEINILKVDLLMESVVPEMFEKEMYEECITLLSPLLFGVQEVDLDALSLHFLGRKDAGITSVELAAIDVLIKSCEKENHLDMEIYLNSHQRKLQILMAGAGMHEYYTSSKSFREKSEAKALSDVETKDSASSHCNQLVAEEVKAISQCISQVKNSIEHSGDSNDIQTRRICDMQFLLLSVMCNVINIFLSKKSSGAEIDDQVERCCLVEAAIAFCKLQHLDLSVPVKSHVELIVATHDLLAEYGLCCWGEGEGEEGKFLKFSIKHLLALDMKLKLNSSVNGKIIECDEMEWQNYQVKASPDRAKLNAQDLGLSQNDETKSTVKDAREDITQEGLSTRKSILKDATEGEFVTQGSEESVSKFNAGENNSDQLVECENEQNEDEKEELELKIDNALDQCFFCLYGLNLRCDSSYDDDLSLHKNTSRGDYQTKEQCADVFQYILPYAKASSRTGLVKLRRVLRAIRKHFLKPPEDVLDGNVIEKFLDDPNLCEEKLSDEAGSDEFLITMTKILLNDVGSIKHYRTSVLGSSEPYLEVYSNLYYFLAQSEEMSATDKWPGFVLTKEGEEFVQHNANLFKYDLLYNPLRFESWQKLAHIYDEEVDLLLNDGSKHINVAGWRKNDTLPHRVEISRRRSRRCLLMSLALAKSPTQQREIHELLALVYYDSLQNVVPFYDQRSVVPPKDEAWFRFCENSLKHFKKAFAHQQDWSHAFYMGKLSEKLGLSHDKALSYYAKAIALNPSAVDSIYRMHVSRLKFLGKCGKRDLQALKDLSTYAFDQSTREAVMEISSKFGPKTSDLPAGMDGSEAYSKDIKHDEFVKVGEAWHMLYNDCLSGLETCVEGDLKHYHKARYTLALGLYRRGESGDVDRAKDELSFCFKSSRSSFTINMWEIDSMVKKGRRKTPGLSGNRKALEVNLPESSRKFITCIRKYLLFYLKLLEETGDICTLERAYISLRADKRFALCIEDLVPVALGRYVKVLITSVRQVGIASSGDASGYEHILEKMFALFMEQGNLWPELCSLPEIQGPGISESNLFGYLHDHIITLERNVKVENLEAINEKIRKRFKNPKLSNINIAKVCRHASTAWCRSLIISLALITPVPSESSTEIQASSSLPVGLESNQLLCVDLQINELWSSTFEDSTHLKSLEPKWCPILSKINNVFVKRAAEVNWETANTLLRSSYNFFRESSCVLPSGLNLYLVPYRLATGVNFQQRMDGVEILDFSMPRKLLLWAYTLVHGHFANISSVVKHCEEHMKSKLKKGAGNPTTQTHANLPAVISSPTVLGIGKDGSNYSGETDAEASQATPVPSTLLSESQTTSSTIPLLSSGDTRKSSFYGPQLQQCSSTIAERITHEGDSDKG 1978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104012904 104028033 - Tan0006107.1 Tan01g3903 741327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3903 1978 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 1 1973 IPR033053 GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0031491(PANTHER)
Tan01g3903 1978 MobiDBLite consensus disorder prediction 1 20 - -
Tan01g3903 1978 Coils Coil 990 1017 - -
Tan01g3903 1978 MobiDBLite consensus disorder prediction 330 359 - -
Tan01g3903 1978 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 13 198 - -
Tan01g3903 1978 SUPERFAMILY TPR-like 98 1368 IPR011990 GO:0005515(InterPro)
Tan01g3903 1978 Gene3D Tetratricopeptide repeat domain 7 194 IPR011990 GO:0005515(InterPro)
Tan01g3903 1978 MobiDBLite consensus disorder prediction 1907 1957 - -
Tan01g3903 1978 SMART tpr_5 1326 1360 IPR019734 GO:0005515(InterPro)
Tan01g3903 1978 SMART tpr_5 81 116 IPR019734 GO:0005515(InterPro)
Tan01g3903 1978 SMART tpr_5 117 150 IPR019734 GO:0005515(InterPro)
Tan01g3903 1978 MobiDBLite consensus disorder prediction 1913 1957 - -
Tan01g3903 1978 MobiDBLite consensus disorder prediction 328 359 - -
Tan01g3903 1978 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3903 K17613 - - csv:101222622 3447.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g39 . . . . . . . . . . Cma01g01445 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02317 Csa03g04535 Chy04g00168 . . . . . . . . . Sed05g1516 Cmo01g01499 . . . . . . Cpe02g00503 Bhi09g02556 Tan01g3903 Cmetu04g0903 . Hepe01g2205 Mch11g0755 . . . . . . . . . . . Cme04g00193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009721 1 3 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 32