Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3908 ATGTCGTGGCAACAGTACGTGGATAAGAACTTGATGTGCGATATTGAAGGCAACCGTCTCTCTGTTGCTGCGATCATTGGCCAAGACGCCACTTTCAAGTTAGAAGAGTTAACAGCCATTACGAATGATTTTGCTGAACCTGGATCATTGCTCCAACTGGTTTGTTCCACGGCGGCACCAAGTACATGGCTATTCAAGGTGAACCTGGTGCTGCCATACGAGGAAAAAAAGAAGACTAGTCTGGCCTTGATCATCGGTATTTATGATGAACAACTCTTGACTCCAGGTCAGTGCAACGTGATCGTCGAAAGGCTAGGCAATTATCTGATTGAGCAGGGGCTGTAG 345 46.67 MSWQQYVDKNLMCDIEGNRLSVAAIIGQDATFKLEELTAITNDFAEPGSLLQLVCSTAAPSTWLFKVNLVLPYEEKKKTSLALIIGIYDEQLLTPGQCNVIVERLGNYLIEQGL 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104045473 104048214 + Tan0008101.1 Tan01g3908 741332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3908 114 SMART prof_2 1 114 IPR005455 GO:0003779(InterPro)
Tan01g3908 114 PANTHER PROFILIN 77 113 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Tan01g3908 114 Gene3D Dynein light chain 2a, cytoplasmic 1 59 - -
Tan01g3908 114 PRINTS Profilin signature 96 113 IPR005455 GO:0003779(InterPro)
Tan01g3908 114 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Tan01g3908 114 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Tan01g3908 114 Gene3D Dynein light chain 2a, cytoplasmic 76 114 - -
Tan01g3908 114 SUPERFAMILY Profilin (actin-binding protein) 2 113 IPR036140 -
Tan01g3908 114 PRINTS Plant profilin signature 1 7 IPR005455 GO:0003779(InterPro)
Tan01g3908 114 PRINTS Plant profilin signature 87 100 IPR005455 GO:0003779(InterPro)
Tan01g3908 114 PRINTS Plant profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Tan01g3908 114 Pfam Profilin 78 114 IPR048278 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3908 K05759 - - sly:101250660 116.701
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3908 Tan-Chr1:104045473 Tan08g0108 Tan-Chr8:944944 1.30E-22 dispersed
Tan01g3908 Tan-Chr1:104045473 Tan06g0232 Tan-Chr6:1910731 2.00E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02319 . . . . . . . . . . . . . . . . . . . . Bhi09g02559 Tan01g3908 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1