Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3910 ATGCTTCTACGAGCATCCCCTCTTCTTCGCGCCTCGCACTTTCCGCTATCCTCTGGGATTCACATGGCGCTAGCTGCCCATCTCCCTTTCTGTCTCACCTCACACAGTTCCTCTTCATGGCGATCTTCTTCGCACTTGGCTTCTCAAGCGAATGGTTACGACCGCATTTCGGCCAAAATAACTTCTTCGCAATTTGTTCGGAGTTTCTACGTTTTGTCGGAAACATACAATAAGGTCCAAAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATCGAAAGGTGAGGAGACGTGCCCCAAAGAATAAGAACAAGGAATTGCAGCTCAACGTCAGTATCTGTATTGAAGAAGAGTTGCCGGACGACCCAGAAATTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCTAAGGCTCTGAAGTTTGCTTTCAACAATCTAAAGGATTCAGAATATGTAACTCGAGATAGTTCAATAAATGATGTTGGTTTATTTGATAGTGTCGAGTTGTCCGTGCTACTTTGTAACGACGAGTTTATTCGTAAACTTAATAAAGAATGGAGGGATGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTTCCAGAACTGAAGCTTCCAATTCTTATGTTAGGTGATATCGTCATTTCTGTCGAGACTGCTGTGAGGCAGGCTGAGGAAAGGGGGCACACACTTCTTGATGAGATTCGGATACTCCTGGTCCATGGATTGTTGCATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAGAAGGAGGAGGAACTACTTTTGAAAAGTTTAGAATGGAAAGGGAAAGGGCTAATTCAGTGTGCAATTGATGCCGAATCTAATTTAAACTCAGTTGCAGAAGTTTCAGATGACAGGAAAAAAGAAGGTAGTCTTCGATTTTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTACATTGCTTAACAGTAAAAGTCAAATTACTCCAACAACTGCCAAGGCTCTGAAAGAGGCCTTGTCAAGGGGTGTGAAAGTTGTTATAGCCACTGGAAAGGCCCGTCCAGCAGTAATAAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGCTGTGTCTGAATTTTCTCCTGGAGTTTTCTTACAGGGACTGCTCGTTTATGGTAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGACCAAGATGTCTGCAGAGAGGCATGCTTTTATTCTTTAGAGAAGAAAGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGGCAGACGTAATGCCTTCGGTTGAGGATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTATTCTTGGACACTGCCGAGGGAGTTTCACGCGTCCTACGGCCATACTGGTCAGAAGCATCGGGGGAACAGGCCGCAGTTGTTCAAGCTGTACCGGACATGCTTGAGATTGTTCCCCGTGGAACCTCAAAAGGTAGTGGAGTGAAAATGCTGCTCGATCATTTGGGAGTCTCTGCTGAGGAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTGGAGCTGGCATCTCTTGGGATTGCTTTGAGCAATGGATCAGAGAAAACAAAAGCTGTTGCTAACCTTATTGGTCCCAGCAATGACGAAGACGGTGTTGCAGATGTCATATACCGATACGCATTCTAG 1770 44.46 MLLRASPLLRASHFPLSSGIHMALAAHLPFCLTSHSSSSWRSSSHLASQANGYDRISAKITSSQFVRSFYVLSETYNKVQRPCGRIFCGQREYRKVRRRAPKNKNKELQLNVSICIEEELPDDPEILSIAEMLRLNVPKALKFAFNNLKDSEYVTRDSSINDVGLFDSVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAVRQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQCAIDAESNLNSVAEVSDDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTAKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGAVSEFSPGVFLQGLLVYGRQGKEIYRRNLDQDVCREACFYSLEKKVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKADVMPSVEDLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEQAAVVQAVPDMLEIVPRGTSKGSGVKMLLDHLGVSAEEVMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 104054319 104062787 - Tan0016244.1 Tan01g3910 741334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3910 589 Gene3D - 320 584 IPR023214 -
Tan01g3910 589 NCBIfam Cof-type HAD-IIB family hydrolase 319 584 IPR000150 GO:0016787(InterPro)
Tan01g3910 589 NCBIfam rRNA maturation RNase YbeY 162 276 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Tan01g3910 589 Pfam Endoribonuclease YbeY 163 275 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Tan01g3910 589 CDD HAD_Pase 320 586 - -
Tan01g3910 589 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 90 565 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Tan01g3910 589 Gene3D - 406 513 - -
Tan01g3910 589 NCBIfam HAD-IIB family hydrolase 319 556 IPR006379 -
Tan01g3910 589 Pfam haloacid dehalogenase-like hydrolase 320 584 - -
Tan01g3910 589 SFLD Haloacid Dehalogenase 320 588 - -
Tan01g3910 589 Gene3D Metalloproteases ("zincins"), catalytic domain 146 278 IPR023091 GO:0004222(InterPro)
Tan01g3910 589 ProSitePatterns Hypothetical cof family signature 1. 319 330 - -
Tan01g3910 589 SUPERFAMILY HAD-like 315 587 IPR036412 -
Tan01g3910 589 Hamap Endoribonuclease YbeY [ybeY]. 111 285 IPR002036 GO:0004222(InterPro)|GO:0006364(InterPro)
Tan01g3910 589 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 167 281 - -
Tan01g3910 589 ProSitePatterns Uncharacterized protein family UPF0054 signature. 245 255 IPR020549 -
Tan01g3910 589 SFLD C2.B: Phosphomannomutase and Phosphatase Like 320 588 - -
Tan01g3910 589 ProSitePatterns Hypothetical cof family signature 2. 538 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3910 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32